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List of works by Marie-Agnès Dillies

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

scientific article

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

scientific article published on 30 September 2015

Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells

scientific article published on January 2006

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection

scientific article

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

scientific article published on 11 March 2016

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

scientific article

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

scientific article

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers

scientific article

Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization

scientific article

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate

scientific article

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide

scientific article (publication date: 2012)

Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

scientific article published on 28 March 2017

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella

scientific article

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.

scientific article published on 21 May 2018

FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance

scientific article published on 15 October 2009

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma

scientific article

Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression

scientific article

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus

scientific article published on 17 September 2013

Identification of RNA partners of viral proteins in infected cells

scientific article published on April 2013

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon

scientific article (publication date: 2013)

In silico comparison of Yersinia pestis and Yersinia pseudotuberculosis transcriptomes reveals a higher expression level of crucial virulence determinants in the plague bacillus ⬇️

scientific article published on October 15, 2010

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

scientific article published on 19 December 2017

Inflammatory control in AIDS-resistant non human primates

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

scholarly article published by Justine Schaeffer in 2018

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26

scientific article published on January 2013

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

scientific article

Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response

scientific article published on December 2009

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

scientific article published on 20 October 2015

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome

scientific article

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

scientific article

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

scientific article

Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae

scientific article published on 30 May 2015

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

scientific article

The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence

scientific article published on 03 August 2009

Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague

scientific article published on September 2007

Transcriptome analysis of antigenic variation in Plasmodium falciparum--var silencing is not dependent on antisense RNA

scientific article

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