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List of works by James M. Bower

3D electron microscopic reconstruction of segments of rat cerebellar Purkinje cell dendrites receiving ascending and parallel fiber granule cell synaptic inputs

scientific article published in June 2009

A Computer Modeling Approach to Understanding the Inferior Olive and Its Relationships to the Cerebellar Cortex in Rats ⬇️

scientific article published in January 1990

A Computer Simulation of Olfactory Cortex with Functional Implications for Storage and Retrieval of Olfactory Information ⬇️

A Computer Simulation of Oscillatory Behavior in Primary Visual Cortex

A Federated Design for a Neurobiological Simulation Engine: The CBI Federated Software Architecture ⬇️

scientific article published on January 5, 2012

Background synaptic activity modulates the response of a modeled purkinje cell to paired afferent input

scientific article

Backwards-compatibility in GENESIS 3.0 and beyond: bridging between procedural and declarative modeling

scientific article

Building an institutional base for Computational Neuroscience: the CBI at UTSA/UTHSCSA.

scientific article

Cerebellum and auditory function: an ALE meta-analysis of functional neuroimaging studies

scientific article published in May 2005

Chapter 27 Is the cerebellum sensory for motor's sake, or motor for sensory's sake: the view from the whiskers of a rat?

Cholinergic Modulation May Enhance Cortical Associative Memory Function ⬇️

Cholinergic Modulation of Associative Memory Function in a Realistic Computational Model of Piriform Cortex

scientific article published in 1993

Computational Efficiency: A Common Organizing Principle for Parallel Computer Maps and Brain Maps? ⬇️

scientific article published in January 1990

Computational analysis of the functional role of cerebellar Basket-type inhibitory connections: compensation or coding?

Computer Simulation of Oscillatory Behavior in Cerebral Cortical Networks ⬇️

scientific article published in January 1990

Consensus paper: roles of the cerebellum in motor control--the diversity of ideas on cerebellar involvement in movement

scientific article

Consensus paper: the role of the cerebellum in perceptual processes

scientific article

Constructing realistic neural simulations with GENESIS.

scientific article

Correlations between purkinje cell single-unit activity and simultaneously recorded field potentials in the immediately underlying granule cell layer

scientific article

Development of model-based publication for scientific communication.

scientific article

Enhanced activation of cerebellar regions during pitch discrimination in humans: a PET study

scientific article published on 20 July 2010

Establishing community models as the underpinning of neuroscience: linking computational and experimental data

scientific article

Feedforward inhibition controls the spread of granule cell-induced Purkinje cell activity in the cerebellar cortex

scientific article published on 18 October 2006

Functional implications of tactile projection patterns to the lateral hemispheres of the cerebellum of the albino rat: the legacy of Wally Welker

scientific article published on April 2011

GENESIS

simulation environment for constructing realistic models of neurobiological systems

GENESIS 3.0 functionality enhanced by interface to multiple types of database

scientific article

GENESIS: A System for Simulating Neural Networks ⬇️

scientific article published in January 1989

Genesis: a neuronal simulation system

Increased activation of the human cerebellum during pitch discrimination: a positron emission tomography (PET) study

scientific article published on 8 October 2011

Information theoretical analysis of differences in information transmission in cerebellar Purkinje cells across species.

scientific article published on 21 July 2014

Interoperability in the GENESIS 3.0 Software Federation: the NEURON Simulator as an Example.

scientific article published on 8 July 2013

Involvement of the cerebellum in semantic discrimination: an fMRI study

scientific article published on March 2003

Ketamine-xylazine-induced slow (< 1.5 Hz) oscillations in the rat piriform (olfactory) cortex are functionally correlated with respiration.

scientific article published in September 2003

Mechanisms underlying reorganization of fractured tactile cerebellar maps after deafferentation in developing and adult rats

scientific article published on 29 June 2005

Model-founded explorations of the roles of molecular layer inhibition in regulating Purkinje cell responses in cerebellar cortex: more trouble for the beam hypothesis ⬇️

scientific article published on August 27, 2010

Modeling Small Oscillating Biological Networks in Analog VLSI ⬇️

scientific article published in January 1989

Modeling TRPC1 mediated slow EPSPs in cerebellar Purkinje cells.

scientific article published on 6 July 2007

Modeling a single dendritic compartment using Neurospaces and GENESIS-3.

scientific article published on 6 July 2007

Multiscale modeling with GENESIS 3, using the G-shell and Python

scientific article

Neural Control of Sensory Acquisition: The Vestibulo-Ocular Reflex ⬇️

scientific article published in January 1989

Neural Networks for Template Matching: Application to Real-Time Classification of the Action Potentials of Real Neurons ⬇️

Optimal Neural Spike Classification ⬇️

Pitch discrimination in cerebellar patients: evidence for a sensory deficit

scientific article published on 18 September 2009

Python as a Federation Tool for GENESIS 3.0 ⬇️

scientific article published on January 20, 2012

Quantifying olfactory perception: mapping olfactory perception space by using multidimensional scaling and self-organizing maps

Rallpacks: A Set of Benchmarks for Neuronal Simulators

Relationship between field potentials and spike activity in rat S1: Multi-site cortical recordings and analysis

Rethinking the "lesser brain".

scientific article published in August 2003

Simulation and Measurement of the Electric Fields Generated by Weakly Electric Fish ⬇️

scientific article published in January 1989

Simulation of networks of spiking neurons: a review of tools and strategies

scientific article

Slow-waves in the olfactory system: an olfactory perspective on cortical rhythms

scientific article published on 13 July 2006

Stimulus representation in rat primary visual cortex: multi-electrode recordings with micro-machined silicon probes and estimation theory

The 40-year history of modeling active dendrites in cerebellar Purkinje cells: emergence of the first single cell "community model"

scientific article

The GENESIS 3.0 Project: a universal graphical user interface and database for research, collaboration, and education in computational neuroscience.

scientific article published on 6 July 2007

The Modeler's Workspace: Making Model-Based Studies of the Nervous System More Accessible

The challenge of connecting the dots in the B.R.A.I.N.

scientific article published on October 2013

The implications of evolutionary changes in the dendritic morphology of cerebellar Purkinje cells for information processing

scientific article published on 8 July 2013

The influence of somatosensory cortex on climbing fiber responses in the lateral hemispheres of the rat cerebellum after peripheral tactile stimulation.

scientific article

The organization of cerebellar cortical circuitry revisited: implications for function

scientific article

The tyranny of the use of homologous series of chemical odorants in olfactory research: does the olfactory system recognize molecules or odors?

Topographical organization of pathways from somatosensory cortex through the pontine nuclei to tactile regions of the rat cerebellar hemispheres.

scientific article published in November 2006

Using transfer entropy to study synaptic integration in Purkinje cells

scientific article published on 18 December 2015

Variable coupling between olfactory system activity and respiration in ketamine/xylazine anesthetized rats

scientific article published on 2 February 2005

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