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List of works by James J. Collins

A CRISPR-Cas9-based gene drive platform for genetic interaction analysis in Candida albicans.

scientific article published on 23 October 2017

A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection

scientific article published on 13 April 2020

A deep learning approach to programmable RNA switches

scientific article published on 07 October 2020

A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

scientific article published on 11 March 2019

A systems biology pipeline identifies regulatory networks for stem cell engineering

scientific article published on 01 July 2019

Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells

scientific article

Author Correction: A systems biology pipeline identifies regulatory networks for stem cell engineering

scientific article published on 01 August 2019

Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate

scientific article published on 26 August 2019

BioBits™ Bright: A fluorescent synthetic biology education kit

scientific article published on 01 August 2018

BioBits™ Explorer: A modular synthetic biology education kit

scientific article published on 01 August 2018

Cell-free biosensors for rapid detection of water contaminants

scientific article published on 06 July 2020

CellNet: network biology applied to stem cell engineering

scientific article

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies

scientific article published on 18 April 2019

Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling

scientific article published in December 2017

Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway

scientific article published on 21 August 2020

Creating CRISPR-responsive smart materials for diagnostics and programmable cargo release

scientific article published on 17 August 2020

Cytoplasmic condensation induced by membrane damage is associated with antibiotic lethality

scientific article published on 19 April 2021

De novo-designed translation-repressing riboregulators for multi-input cellular logic

scientific article published on 04 November 2019

Deconstructing transcriptional heterogeneity in pluripotent stem cells

scientific article published on December 2014

Defining cellular identity through network biology

scientific article published on January 2014

Definitions and guidelines for research on antibiotic persistence

scientific article published on 01 July 2019

Dispersing biofilms with engineered enzymatic bacteriophage

scientific article

Dissecting engineered cell types and enhancing cell fate conversion via CellNet

scientific article published on August 2014

Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing

scientific article published on 11 September 2020

Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells

scientific article

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

scientific article published in Nature

Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples

scientific article published in 2022

Genomic approaches to deconstruct pluripotency

scientific article published on January 2011

Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA.

scientific article

Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors

scientific article published on October 2013

LIN28 Regulates Stem Cell Metabolism and Conversion to Primed Pluripotency

scientific article

Leveraging artificial intelligence in the fight against infectious diseases

scientific article published on 13 July 2023

Mechanism of stochastic resonance enhancement in neuronal models driven by 1 / f noise

scientific article

Modulating the evolutionary trajectory of tolerance using antibiotics with different metabolic dependencies

scientific article published in 2022

Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma

scientific article

Nucleic acid detection with CRISPR-Cas13a/C2c2

scientific article

Predictive biology: modelling, understanding and harnessing microbial complexity

scientific article published on 29 May 2020

Probiotic strains detect and suppress cholera in mice

scientific article published on 01 June 2018

Programmable CRISPR-responsive smart materials

scientific article published on 01 August 2019

Publisher Correction: Definitions and guidelines for research on antibiotic persistence

scientific article published on 01 July 2019

RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming

scientific article published on 8 June 2016

Reconstruction of complex single-cell trajectories using CellRouter.

scientific article published in March 2018

Reprogramming of T cells from human peripheral blood

scientific article

Systematic identification of factors for provirus silencing in embryonic stem cells

scientific article

The transcriptional landscape of hematopoietic stem cell ontogeny

scientific article published on November 2012

Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria

scientific article published on 21 September 2020

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