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List of works by Elie Maza

Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes.

scientific article published on 30 July 2013

Comprehensive Profiling of Ethylene Response Factor Expression Identifies Ripening-Associated ERF Genes and Their Link to Key Regulators of Fruit Ripening in Tomato

scientific article published on 6 January 2016

Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance

scientific article

Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato

scientific article published on 7 January 2014

Grapevine Rootstocks Differentially Affect the Rate of Ripening and Modulate Auxin-Related Genes in Cabernet Sauvignon Berries.

scientific article published on 9 February 2016

In Papyro Comparison of TMM (edgeR), RLE (DESeq2), and MRN Normalization Methods for a Simple Two-Conditions-Without-Replicates RNA-Seq Experimental Design

scientific article published on 16 September 2016

Interaction of two MADS-box genes leads to growth phenotype divergence of all-flesh type of tomatoes

scientific article published on 25 November 2021

Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size

scientific article published on 14 February 2018

Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits

scientific article published on 14 September 2017

Proteomic analysis of chloroplast-to-chromoplast transition in tomato reveals metabolic shifts coupled with disrupted thylakoid biogenesis machinery and elevated energy-production components.

scientific article published on 20 August 2012

Statistical properties of the quantile normalization method for density curve alignment.

scientific article

TomExpress, a unified tomato RNA-Seq platform for visualization of expression data, clustering and correlation networks.

scientific article published on 5 September 2017

Transcriptome pathways in leaf and root of grapevine genotypes with contrasting drought tolerance

Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.

scientific article published on 24 November 2017

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