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List of works by Jessica C Mar

A promoter-level mammalian expression atlas

scientific article

Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization

scientific article

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

scientific article published on 14 December 2015

Arteriolar niches maintain haematopoietic stem cell quiescence.

scientific article published on 09 October 2013

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation

scientific article

Canonical NF-kappaB activation is essential for Epstein-Barr virus latent membrane protein 1 TES2/CTAR2 gene regulation

scientific article published on 4 May 2011

Changes in gene expression variability reveal a stable synthetic lethal interaction network in BRCA2- ovarian cancers.

scientific article

Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway.

scientific article published on 11 November 2014

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

scientific article

Decomposition of gene expression state space trajectories

scientific article

Defining an informativeness metric for clustering gene expression data ⬇️

scientific article published on February 16, 2011

Divergent reprogramming routes lead to alternative stem-cell states

scientific article

Epstein-Barr virus exploits intrinsic B-lymphocyte transcription programs to achieve immortal cell growth

scientific article

Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines

scientific article

Erratum: Corrigendum: Divergent reprogramming routes lead to alternative stem-cell states

scientific article published in Nature

Erratum: Corrigendum: Genome-wide characterization of the routes to pluripotency

scientific article published in Nature

Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data.

scientific article

Further evidence for BRCA1 communication with the inactive X chromosome

scientific article published in March 2007

Gene expression variability as a unifying element of the pluripotency network

scientific article

Genome-wide characterization of the routes to pluripotency.

scientific article published on December 2014

Genome-wide siRNA screen for mediators of NF-κB activation

scientific article published on 17 January 2012

HPV16 E7 oncogene expression in normal human epithelial cells causes molecular changes indicative of an epithelial to mesenchymal transition

scientific article

Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survival

scientific article published on 07 September 2020

Immunogenetics of CD4 lymphocyte count recovery during antiretroviral therapy: An AIDS Clinical Trials Group study

scientific article published on 6 September 2006

Induced Pluripotent Stem Cells from Ataxia-Telangiectasia Recapitulate the Cellular Phenotype ⬇️

scientific article published on June 28, 2012

Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples

scientific article

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

scientific journal article

Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

scientific article published on 05 November 2020

Metformin regulates metabolic and nonmetabolic pathways in skeletal muscle and subcutaneous adipose tissues of older adults

scientific article published on 31 January 2018

Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks

scientific article published on 18 February 2016

Not to be suppressed? Rethinking the host response at a root-parasite interface

scientific article published on 22 August 2013

Self-renewal of a purified Tie2+ hematopoietic stem cell population relies on mitochondrial clearance.

scientific article

Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells.

scientific article

Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles

scientific article

Stem cell factor is selectively secreted by arterial endothelial cells in bone marrow.

scientific article

Temporal dynamics and transcriptional control using single-cell gene expression analysis

scientific article

The Majority of CD45 Ter119 CD31 Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors

scientific article published on 09 October 2018

The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences

scientific article

The rise of the distributions: why non-normality is important for understanding the transcriptome and beyond

scientific article published on 07 January 2019

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Therapeutic implications of GIPC1 silencing in cancer

scientific article

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

scientific article published on 19 August 2015

Variance of gene expression identifies altered network constraints in neurological disease

scientific article

Viral perturbations of host networks reflect disease etiology

scientific article

attract: A Method for Identifying Core Pathways That Define Cellular Phenotypes ⬇️

scientific article published on October 14, 2011

nEASE: a method for gene ontology subclassification of high-throughput gene expression data.

scientific article

pathVar: a new method for pathway-based interpretation of gene expression variability.

scientific article published on 23 May 2017

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