List of works - Jacob L. Steenwyk

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium

scientific article published on 09 July 2019

A portrait of budding yeasts: A symbol of the arts, sciences and a whole greater than the sum of its parts

scientific article published on 01 September 2020

A robust phylogenomic timetree for biotechnologically and medically important fungi from Aspergillaceae (Eurotiomycetes, Ascomycota)

An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function

scientific article published on 04 May 2022

Aspergillus fumigatus Acetate Utilization Impacts Virulence Traits and Pathogenicity

scientific article published in 2021

Biosynthetic gene clusters and the evolution of fungal chemodiversity

scientific article published on 03 January 2020

Characterizing the Pathogenic, Genomic, and Chemical Traits of , a Close Relative of the Major Human Fungal Pathogen

scientific article published on 20 February 2019

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

scientific article published on 02 December 2020

Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest

scientific article

Draft Genome Sequence of the Griseofulvin-Producing Fungus Xylaria flabelliformis Strain G536

scientific article published on 19 September 2019

Draft Genome Sequences of Four Aspergillus Section Fumigati Clinical Strains

scientific article published on 01 October 2020

Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity

scientific article published on 27 February 2020

Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains

scientific article

Extensive loss of cell cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

article

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

article

Feature frequency profile-based phylogenies are inaccurate

scientific article published on 24 November 2020

Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans

scientific article published on 08 April 2020

Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota

scientific article published on 04 November 2020

Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus

scientific article published on 09 June 2021

Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus

scientific article published on 06 November 2020

Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

scientific article published on 25 April 2024

Gliotoxin, a Known Virulence Factor in the Major Human Pathogen Aspergillus fumigatus, Is Also Biosynthesized by Its Nonpathogenic Relative Aspergillus fischeri

scientific article published on 11 February 2020

Into the wild: new yeast genomes from natural environments and new tools for their analysis

scientific article published on 01 March 2020

Mapping the Fungal Battlefield: Using Chemistry and Deletion Mutants to Monitor Interspecific Chemical Interactions Between Fungi

scientific article published on 19 February 2019

Nutritional Heterogeneity Among Strains Has Consequences for Virulence in a Strain- and Host-Dependent Manner

scientific article published on 24 April 2019

Rapid Phenotypic and Metabolomic Domestication of Wild Penicillium Molds on Cheese

scientific article published on 15 October 2019

Resistance-Guided Mining of Bacterial Genotoxins Defines a Family of DNA Glycosylases

scientific article published on 21 March 2022

Signatures of optimal codon usage in metabolic genes inform budding yeast ecology

scientific article published on 19 April 2021

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

scientific article published on 08 November 2018

The Aspergillus fumigatus transcription factor RglT is important for gliotoxin biosynthesis and self-protection, and virulence

scientific article published on 15 July 2020

Treehouse: a user-friendly application to obtain subtrees from large phylogenies

scientific article published on 27 August 2019

Variation and selection on codon usage bias across an entire subphylum

scientific article published on 31 July 2019

integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth

List of works by Jacob L. Steenwyk