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List of works by Raphael M. Kudela

A Global End-Member Approach to Derive aCDOM(440) from Near-Surface Optical Measurements

preprint

A coastal ocean extreme bloom incubator

scholarly article

A compilation of global bio-optical in situ data for ocean-colour satellite applications – version two

scientific article published in 2019

A global end-member approach to derive aCDOM(440) from near-surface optical measurements

scholarly article

A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean

scientific article

A method for determining alkaline phosphatase activity in marine phytoplankton using spectrofluorometry

scientific article published on 15 March 2012

A novel random forest approach to revealing interactions and controls on chlorophyll concentration and bacterial communities during coastal phytoplankton blooms

scholarly article

Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks

scholarly article by Frank E Muller-Karger published in June 2018

An evaluation of ISFET sensors for coastal pH monitoring applications

An underwater light attenuation scheme for marine ecosystem models.

scientific article

An unprecedented coastwide toxic algal bloom linked to anomalous ocean conditions

scientific article published on 09 October 2016

Application of Solid Phase Adsorption Toxin Tracking (SPATT) for field detection of the hydrophilic phycotoxins domoic acid and saxitoxin in coastal California

scientific article published on 25 November 2010

Application of the Hyperspectral Imager for the Coastal Ocean to Phytoplankton Ecology Studies in Monterey Bay, CA, USA

scholarly article by John Ryan et al published 27 January 2014 in Remote Sensing

Are we missing important areas in pelagic marine conservation? Redefining conservation hotspots in the ocean

scientific article published in 2016

Atmospheric correction with the Bayesian empirical line

scientific article

Author Correction: Large-scale shift in the structure of a kelp forest ecosystem co-occurs with an epizootic and marine heatwave

correction of a scholarly article

Bilateral Mastoiditis from Red Tide Exposure ⬇️

scientific article published on August 30, 2010

Blurred lines: Multiple freshwater and marine algal toxins at the land-sea interface of San Francisco Bay, California

scientific article published on 10 March 2018

Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow

scholarly article by J.P. Ryan published in March 2014

Causality of an extreme harmful algal bloom in Monterey Bay, California, during the 2014-2016 northeast Pacific warm anomaly

article

Chlorophyll absorption and phytoplankton size information inferred from hyperspectral particulate beam attenuation

scientific article published on 01 August 2020

Circulation and environmental conditions during a toxigenic Pseudo-nitzschia australis bloom in the Santa Barbara Channel, California

scientific article published on 10 August 2007

Climate Extreme Seeds a New Domoic Acid Hotspot on the US West Coast

scientific article published on 14 December 2020

Clinical Signs and Pathology Associated With Domoic Acid Toxicosis in Southern Sea Otters (Enhydra lutris nereis)

scientific article published in 2021

Coastal Ocean Physics and Red Tides: An Example from Monterey Bay, California

article by John Ryan et al published 1 June 2005 in Oceanography

Comparison of two in-water optical profilers in a dynamic coastal marine ecosystem

scientific article published on 01 September 2019

Contrasting wind patterns and toxigenic phytoplankton in the southern Benguela upwelling system

scientific article published on 25 October 2007

Contributors

Correction to “Planktonic growth and grazing in the Columbia River plume region: A biophysical model study”

scholarly article

Correction: Ryan, J., et al. Application of the Hyperspectral Imager for the Coastal Ocean to Phytoplankton Ecology Studies in Monterey Bay, CA, USA. Remote Sens. 2014, 6, 1007–1025

scholarly article by Marcos Montes et al published 12 October 2015 in Remote Sensing

Cryptic Blooms: Are Thin Layers the Missing Connection?

Detecting toxic diatom blooms from ocean color and a regional ocean model

article

Development, calibration, and evaluation of a model of Pseudo-nitzschia and domoic acid production for regional ocean modeling studies

scientific article published in 2022

Development, comparison, and validation using ELISAs for the determination of domoic acid in California sea lion body fluids

scientific article

Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling

article

Does horizontal mixing explain phytoplankton dynamics? ⬇️

scientific article published on October 25, 2010

Empirical models of toxigenic Pseudo-nitzschia blooms: Potential use as a remote detection tool in the Santa Barbara Channel

scientific article published on 01 November 2008

Essential ocean variables for global sustained observations of biodiversity and ecosystem changes.

scientific article published on 5 April 2018

Establishing the Foundation for the Global Observing System for Marine Life

scientific article

Estuary-enhanced upwelling of marine nutrients fuels coastal productivity in the U.S. Pacific Northwest

Evaluation of California isolates ofLingulodinium polyedrumfor the production of yessotoxin

article

Evidence for a novel marine harmful algal bloom: cyanotoxin (microcystin) transfer from land to sea otters

scientific article published on 10 September 2010

Evidence of freshwater algal toxins in marine shellfish: Implications for human and aquatic health

scientific article published on 3 October 2016

Exposure to domoic acid is an ecological driver of cardiac disease in southern sea otters✰

scientific article published in 2021

Forensic genomics as a novel tool for identifying the causes of mass mortality events

scientific article published on 16 April 2014

Future HAB science: Directions and challenges in a changing climate

scientific article published on 30 September 2019

GEOHAB–The Global Ecology and Oceanography of Harmful Algal Blooms Program: Motivation, Goals, and Legacy

scholarly article by Raphael Kudela published in March 2017

Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study.

scientific article

GlobalHAB: A New Program to Promote International Research, Observations, and Modeling of Harmful Algal Blooms in Aquatic Systems

scientific article published in 2017

Harmful Algae in Benthic Systems: A GEOHAB Core Research Program

scientific article published in May 2012

Harmful Algal Blooms in Coastal Upwelling Systems

scientific article published in 2005

Harmful algal blooms along the North American west coast region: History, trends, causes, and impacts

article

Harmful algal blooms and climate change: Learning from the past and present to forecast the future

scientific article

Harmful algal blooms and eutrophication: Examining linkages from selected coastal regions of the United States

scientific article published on December 2008

Hepatotoxic shellfish poisoning: Accumulation of microcystins in Eastern oysters (Crassostrea virginica) and Asian clams (Corbicula fluminea) exposed to wild and cultured populations of the harmful cyanobacteria, Microcystis

scientific article published in 2022

Hidden thin layers of toxic diatoms in a coastal bay

article

Hindcasts of potential harmful algal bloom transport pathways on the Pacific Northwest coast

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

scientific article

Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific

scientific article published on 16 September 2019

Identification of harmful cyanobacteria in the Sacramento-San Joaquin Delta and Clear Lake, California by DNA barcoding.

scientific article published on 30 September 2013

Influences of upwelling and downwelling winds on red tide bloom dynamics in Monterey Bay, California

article by John P. Ryan et al published March 2009 in Continental Shelf Research

Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system

scientific article published on 23 September 2016

Inorganic and organic nitrogen uptake by the toxigenic diatom Pseudo-nitzschia australis (Bacillariophyceae)

scientific article published on 30 August 2008

Integrative monitoring strategy for marine and freshwater harmful algal blooms and toxins across the freshwater‐to‐marine continuum

scientific article published in 2022

Investigation of a Largescale Common Murre ( Uria aalge) Mortality Event in California in 2015.

scientific article published on 16 March 2018

Is San Francisco Bay resistant to Pseudo-nitzschia and domoic acid?

scientific article published on 26 November 2019

Kelp Patch-Specific Characteristics Limit Detection Capability of Rapid Survey Method for Determining Canopy Biomass Using an Unmanned Aerial Vehicle

scientific article published on 14 July 2022

Large-scale shift in the structure of a kelp forest ecosystem co-occurs with an epizootic and marine heatwave

scientific article published on 05 March 2021

Linking Capacity Development to GOOS Monitoring Networks to Achieve Sustained Ocean Observation

scholarly article by Nicholas J. Bax et al published 25 September 2018 in Frontiers in Marine Science

Linking the physiology and ecology of Cochlodinium to better understand harmful algal bloom events: A comparative approach

Mapping bull kelp canopy in northern California using Landsat to enable long-term monitoring

scientific article published on 17 December 2020

Marine phytoplankton temperature versus growth responses from polar to tropical waters--outcome of a scientific community-wide study

scientific article published on 21 May 2013

Mass stranding of marine birds caused by a surfactant-producing red tide

scientific article published in 2009

Microcystin Prevalence throughout Lentic Waterbodies in Coastal Southern California

scientific article published on 22 July 2017

Mitigating the Expansion of Harmful Algal Blooms Across the Freshwater-to-Marine Continuum

scientific article published on 25 April 2018

Modeled trace element concentrations and partitioning in the San Francisco estuary, based on suspended solids concentration

scientific article published in August 2010

Movement and diving behavior of male California sea lion (Zalophus californianus) during anomalous oceanographic conditions of 2005 compared to those of 2004

scholarly article

Multiple co-occurring and persistently detected cyanotoxins and associated cyanobacteria in adjacent California lakes

scientific article published on 08 January 2021

Multiple trophic levels fueled by recirculation in the Columbia River plume

article

NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms

scientific article published on 21 February 2021

New Insights into the Controls and Mechanisms of Plankton Productivity in Coastal Upwelling Waters of the Northern California Current System

article

Nitrogen cycle of the open ocean: from genes to ecosystems.

scientific article

Nitrogenous preference of toxigenic Pseudo-nitzschia australis (Bacillariophyceae) from field and laboratory experiments

scientific article published on 02 September 2006

Novel Analyses of Long-Term Data Provide a Scientific Basis for Chlorophyll-a Thresholds in San Francisco Bay

article

Nutrient Loading through Submarine Groundwater Discharge and Phytoplankton Growth in Monterey Bay, CA.

scientific article published on 19 May 2015

Ocean Color Quality Control Masks Contain the High Phytoplankton Fraction of Coastal Ocean Observations

scholarly article

Ocean science. Photosynthesis in the open ocean

scientific article published in November 2009

Ocean urea fertilization for carbon credits poses high ecological risks

scientific article

Optimized multi-satellite merger of primary production estimates in the California Current using inherent optical properties

scientific article published on 11 June 2014

Optimizing irradiance estimates for coastal and inland water imaging spectroscopy

article

Pelagic harmful algal blooms and climate change: Lessons from nature’s experiments with extremes

scientific article published on 03 May 2019

Persistent domoic acid in marine sediments and benthic infauna along the coast of Southern California

scholarly article

Phylogenetic relationships of yessotoxin-producing dinoflagellates, based on the large subunit and internal transcribed spacer ribosomal DNA domains

scientific article (publication date: 2009)

Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events

scientific article published on 12 September 2016

Pseudo-nitzschia species composition varies concurrently with domoic acid concentrations during two different bloom events in the Southern California Bight

scientific article published on 03 December 2017

QUANTITATIVE REAL-TIME POLYMERASE CHAIN REACTION FOR COCHLODINIUM FULVESCENS (DINOPHYCEAE), A HARMFUL DINOFLAGELLATE FROM CALIFORNIA COASTAL WATERS(1).

scientific article published on 15 March 2012

Receptor binding assay for the detection of paralytic shellfish poisoning toxins: comparison to the mouse bioassay and applicability under regulatory use.

scientific article published on 18 August 2017

Recurrent frontal slicks of a coastal ocean upwelling shadow

scholarly article

Remote sensing of phytoplankton functional types in the coastal ocean from the HyspIRI Preparatory Flight Campaign

scientific article published on 29 May 2015

Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters

scholarly article by David A. Caron et al published February 2017 in Estuarine, Coastal and Shelf Science

Return of the “age of dinoflagellates” in Monterey Bay: Drivers of dinoflagellate dominance examined using automated imaging flow cytometry and long‐term time series analysis

scholarly article

River Influences on Shelf Ecosystems: Introduction and synthesis

scholarly article

Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems

scientific article published on 6 March 2018

Scaling Up From Regional Case Studies to a Global Harmful Algal Bloom Observing System

scientific article published on 22 May 2019

Sensitivity analysis of volume scattering phase functions

scientific article published on August 2016

Southern Ocean iron enrichment experiment: carbon cycling in high- and low-Si waters

scientific article

Spatial Variability of Suspended Sediments in San Francisco Bay, California

scholarly article

Stable isotope analysis reveals differences in domoic acid accumulation and feeding strategies of key vectors in a California hotspot for outbreaks

scientific article published on 25 October 2021

The potential role of anthropogenically derived nitrogen in the growth of harmful algae in California, USA

scientific article published on 08 September 2008

The role of nutrients in regulation and promotion of harmful algal blooms in upwelling systems

scientific article published on 15 February 2010

Treatment of cyanobacterial (microcystin) toxicosis using oral cholestyramine: case report of a dog from Montana

scientific article

Trends in Dinophysis abundance and diarrhetic shellfish toxin levels in California mussels (Mytilus californianus) from Monterey Bay, California

scientific article published on 20 August 2019

Trends in primary production in the California Current detected with satellite data

scholarly article

Understanding harmful algae in stratified systems: Review of progress and future directions

article

Unexpected presence of the nitrogen-fixing symbiotic cyanobacterium UCYN-A in Monterey Bay, California

scientific article published on 01 July 2020

Using the molecular toolbox to compare harmful algal blooms in upwelling systems

scientific article published on 15 February 2010

Variation in growth rate, carbon assimilation, and photosynthetic efficiency in response to nitrogen source and concentration in phytoplankton isolated from upper San Francisco Bay.

scientific article

Variation in the abundance of Pseudo-nitzschia and domoic acid with surf zone type

scientific article published on 25 March 2016

Verification and Validation of Hybridspectral Radiometry Obtained from an Unmanned Surface Vessel (USV) in the Open and Coastal Oceans

scholarly article

WEST: A northern California study of the role of wind-driven transport in the productivity of coastal plankton communities

Widespread anatoxin-a detection in benthic cyanobacterial mats throughout a river network.

scientific article published on 18 May 2018

Yessotoxin detected in mussel (Mytilus californicus) and phytoplankton samples from the U.S. west coast

scholarly article by Meredith D.A. Howard et al published August 2008 in Harmful Algae

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