List of works - Michelle O'Malley

A parts list for fungal cellulosomes revealed by comparative genomics

scientific article published on 30 May 2017

Anaerobic gut fungi are an untapped reservoir of natural products

scientific article published in 2021

Bridging non-overlapping reads illuminates high-order epistasis between distal protein sites in a GPCR

scientific article published on 04 February 2020

Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts

scientific article published on 15 September 2018

Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes

scientific article published on 14 May 2019

Common principles and best practices for engineering microbiomes

scientific article published on 23 September 2019

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

scientific article published on 10 December 2021

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

scientific article published on 18 February 2016

Ecology and molecular targets of hypermutation in the global microbiome

scientific article published on 24 May 2021

Engineered fluoride sensitivity enables biocontainment and selection of genetically-modified yeasts

scientific article published on 29 October 2020

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus

scientific article published on 15 February 2021

Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

scientific article published on 21 August 2017

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

scientific article published on 01 February 2021

Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose

scientific article

Non-destructive quantification of anaerobic gut fungi and methanogens in co-culture reveals increased fungal growth rate and changes in metabolic flux relative to mono-culture

scientific article published in 2021

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

scientific article published on 14 September 2020

Top-Down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation

scientific article published on 04 September 2019

Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus

scientific article published on 20 December 2017

Tuning Vector Stability and Integration Frequency Elevates Functional GPCR Production and Homogeneity in Saccharomyces cerevisiae

scientific article published on 05 July 2018

Widespread adenine N6-methylation of active genes in fungi.