List of works by Jack Greenblatt

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data ⬇️

scientific article (publication date: 17 October 2003)

A Role for SlyD in theEscherichia coliHydrogenase Biosynthetic Pathway

scientific article published in Journal of Biological Chemistry

A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

scientific article

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair

scientific article

A genome-wide screen identifies the evolutionarily conserved KEOPS complex as a telomere regulator

scientific article

A histone code for chromatin assembly

scientific article published in July 2008

A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency

scientific article

A panoramic view of yeast noncoding RNA processing

scientific article

A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery

scientific article

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

scientific article

A unified model for yeast transcript definition

scientific article published on 29 October 2013

An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe

scientific article published on 15 November 2009

An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell

scientific article

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli

scientific article

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

scientific article published on 29 June 2015

Association with the origin recognition complex suggests a novel role for histone acetyltransferase Hat1p/Hat2p

scientific article

BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex

scientific article

Biosynthesis of the respiratory formate dehydrogenases from Escherichia coli: characterization of the FdhE protein

scientific article

Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

scientific article

Bridging structural biology and genomics: assessing protein interaction data with known complexes

scientific article

Bridging structural biology and genomics: assessing protein interaction data with known complexes

scientific article published on 01 October 2002

Bromodomain factor 1 (Bdf1) is phosphorylated by protein kinase CK2

scientific article

C2H2 zinc finger proteins greatly expand the human regulatory lexicon

scientific article published on 18 February 2015

COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression

scientific article

Chaperone control of the activity and specificity of the histone H3 acetyltransferase Rtt109.

scientific article

Conserved network of proteins essential for bacterial viability

scientific article published on 17 April 2009

Control of the RNA polymerase II phosphorylation state in promoter regions by CTD interaction domain-containing proteins RPRD1A and RPRD1B

scientific article

Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5.

scientific article

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

scientific article

Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins

scientific article published on 01 May 2019

DAnCER: disease-annotated chromatin epigenetics resource

scientific article

Defining the budding yeast chromatin-associated interactome

scientific article

Dephosphorylation of RNA Polymerase I by Fcp1p Is Required for Efficient rRNA Synthesis

scientific article published on 08 April 2004

Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID

scientific article published in Nature

Direct interaction between the PRDM3 and PRDM16 tumor suppressors and the NuRD chromatin remodeling complex

scientific article published on 20 November 2018

Discovery of a chemical probe for the L3MBTL3 methyllysine reader domain

scientific article published on 6 January 2013

ESF1 is required for 18S rRNA synthesis in Saccharomyces cerevisiae

scientific article

Epistatic relationships reveal the functional organization of yeast transcription factors

scientific article

Erratum: Corrigendum: A phosphatase complex that dephosphorylates γH2AX regulates DNA damage checkpoint recovery

scientific article published in Nature

Esf2p, a U3-associated factor required for small-subunit processome assembly and compaction

scientific article

Examining protein protein interactions using endogenously tagged yeast arrays: the cross-and-capture system

scientific article

Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human

scientific article

Exploration of essential gene functions via titratable promoter alleles

scientific article

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

scientific article

Extracting high confidence protein interactions from affinity purification data: at the crossroads

scientific article

Formation of a distinctive complex between the inducible bacterial lysine decarboxylase and a novel AAA+ ATPase

scientific article published on 21 November 2005

Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila

scientific article published on 01 June 2021

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

scientific article (publication date: 12 April 2007)

G9a and ZNF644 Physically Associate to Suppress Progenitor Gene Expression during Neurogenesis

scientific article published on 17 August 2016

Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways

scientific article

Genomic location of the human RNA polymerase II general machinery: evidence for a role of TFIIF and Rpb7 at both early and late stages of transcription

scientific article

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

scientific article

Global landscape of cell envelope protein complexes in Escherichia coli.

scientific article published on 27 November 2017

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

scientific article

Global mapping of the yeast genetic interaction network

scientific article

H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex.

scientific article

High-definition macromolecular composition of yeast RNA-processing complexes

scientific article

Histone H2B ubiquitylation is associated with elongating RNA polymerase II

scientific article

Hsp110 is required for spindle length control

scientific article

Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation

scientific article

INO80 and gamma-H2AX interaction links ATP-dependent chromatin remodeling to DNA damage repair.

scientific article

Identification and Characterization of USP7 Targets in Cancer Cells

scientific article published in Scientific Reports

Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae

scientific article

Identification of a BET family bromodomain/casein kinase II/TAF-containing complex as a regulator of mitotic condensin function

scientific article published on 22 February 2014

Identification of herpesvirus proteins that contribute to G1/S arrest

scientific article

Identification of mammalian protein complexes by lentiviral-based affinity purification and mass spectrometry

scientific article published in January 2011

Identification of protein complexes in Escherichia coli using sequential peptide affinity purification in combination with tandem mass spectrometry

scientific article

Identifying functional modules in the physical interactome of Saccharomyces cerevisiae

scientific article published on March 2007

Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface.

scientific article

Interacting proteins Rtt109 and Vps75 affect the efficiency of non-homologous end-joining in Saccharomyces cerevisiae

scientific article

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae

scientific article

Interaction network containing conserved and essential protein complexes in Escherichia coli

scientific article (publication date: 3 February 2005)

Interaction of Fcp1 phosphatase with elongating RNA polymerase II holoenzyme, enzymatic mechanism of action, and genetic interaction with elongator

scientific article published on 24 November 2004

Interactions of the Escherichia coli hydrogenase biosynthetic proteins: HybG complex formation

scientific article published on 28 December 2005

Interactions of the HIV-1 Tat and RAP74 proteins with the RNA polymerase II CTD phosphatase FCP1

scientific journal article

Investigating the in vivo activity of the DeaD protein using protein-protein interactions and the translational activity of structured chloramphenicol acetyltransferase mRNAs

scientific article published on February 2007

Local coherence in genetic interaction patterns reveals prevalent functional versatility

scientific article

MKRN2 Physically Interacts with GLE1 to Regulate mRNA Export and Zebrafish Retinal Development

scientific article published on 01 May 2020

Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing.

scientific article

Mapping bacterial functional networks and pathways in Escherichia Coli using synthetic genetic arrays

scientific article

Mapping the functional yeast ABC transporter interactome

scientific article published on 07 July 2013

Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors

scientific article published in February 2017

Multiparameter functional diversity of human C2H2 zinc finger proteins.

scientific article published on 16 November 2016

NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1

scientific article

Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone

scientific article

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

scientific article

Optimizing Production of Antigens and Fabs in the Context of Generating Recombinant Antibodies to Human Proteins

scientific article published on 5 October 2015

Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

scientific article

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms

scientific article published on 20 January 2011

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

scientific article

Panorama of ancient metazoan macromolecular complexes

scientific article published on 07 September 2015

Proteasome Involvement in the Repair of DNA Double-Strand Breaks

Protein profiling with Epstein-Barr nuclear antigen-1 reveals an interaction with the herpesvirus-associated ubiquitin-specific protease HAUSP/USP7.

scientific article

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

scientific article

Purification and assay of Saccharomyces cerevisiae phosphatase that acts on the C-terminal domain of the largest subunit of RNA polymerase II.

scientific article

Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli

scientific article

RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments

scientific article published on 28 February 2013

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

scientific article

RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits

scientific article

RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation

scientific article

Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4

scientific article

Regulation of transcription elongation by phosphorylation

scientific article

Ribosome-dependent ATPase interacts with conserved membrane protein in Escherichia coli to modulate protein synthesis and oxidative phosphorylation

scientific article

Riding high on the TATA box

scientific article published in Nature

SARS-CoV-2 Nucleocapsid protein attenuates stress granule formation and alters gene expression via direct interaction with host mRNAs

scientific article published on 23 October 2020

SARS-CoV-2 Nucleocapsid protein attenuates stress granules and interacts with mRNAs to impair host stress response

scientific article

SMN and symmetric arginine dimethylation of RNA polymerase II C-terminal domain control termination

scientific journal article

Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes.

scientific article

Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli

scientific article published on January 2009

Solution structure of the carboxyl-terminal domain of RAP74 and NMR characterization of the FCP1-binding sites of RAP74 and human TFIIB

scientific article (publication date: 18 February 2003)

Stable complex formation between HIV Rev and the nucleosome assembly protein, NAP1, affects Rev function.

scientific article published in April 2009

Structure of a SLC26 anion transporter STAS domain in complex with acyl carrier protein: implications for E. coli YchM in fatty acid metabolism

scientific article

Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme

scientific article

Systematic characterization of the protein interaction network and protein complexes in Saccharomyces cerevisiae using tandem affinity purification and mass spectrometry

scientific article

Systems-level analyses identify extensive coupling among gene expression machines

scientific article published on 17 January 2006

Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes

scientific article published on 31 July 2009

Termination of transcription by nusA gene protein of Escherichia coli

scientific article published in Nature

The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes.

scientific article published in March 2008

The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation

scientific article published on 04 July 2019

The MoxR ATPase RavA and its cofactor ViaA interact with the NADH:ubiquinone oxidoreductase I in Escherichia coli

scientific article published on 15 January 2014

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

scientific article

The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes.

scientific article published on 6 November 2006

The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4.

scientific article

The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism

scientific article

The carboxyl terminus of Rtt109 functions in chaperone control of histone acetylation

scientific article published on March 2013

The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion

scientific article

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses

scientific article

The functional landscape of mouse gene expression

scientific article

The highly conserved glutamic acid 791 of Rpb2 is involved in the binding of NTP and Mg(B) in the active center of human RNA polymerase II.

scientific article

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The program for processing newly synthesized histones H3.1 and H4

scientific article

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

scientific article published on 25 November 2004

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

scientific article (publication date: March 2007)

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression

scientific article

eSGA: E. coli synthetic genetic array analysis

scientific article

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