List of works - Julian R Marchesi

A bacterial driver–passenger model for colorectal cancer: beyond the usual suspects

article

A microplate fluorimetric assay for measuring dehalogenase activity.

scientific article published in October 2003

A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome.

scientific article

A prospective analysis of mucosal microbiome-metabonome interactions in colorectal cancer using a combined MAS 1HNMR and metataxonomic strategy

scientific article published on 21 August 2017

Advancing microbiome research

scientific article published on 26 June 2018

Advancing microbiome research

scientific article published on 25 June 2018

Age and microenvironment outweigh genetic influence on the Zucker rat microbiome

scientific article (publication date: 2014)

Antibiotic-Associated Disruption of Microbiota Composition and Function in Cirrhosis Is Restored by Fecal Transplant

scientific article published on 01 September 2018

Assessing the impact of long term frozen storage of faecal samples on protein concentration and protease activity

scientific article published on 4 February 2016

Assessment of microbiota:host interactions at the vaginal mucosa interface

scientific article published on 27 April 2018

Biology of the Microbiome 2: Metabolic Role.

scientific article

Cervical intraepithelial neoplasia disease progression is associated with increased vaginal microbiome diversity

scientific article published on 17 November 2015

Changes in IgA-targeted microbiota following fecal transplantation for recurrent <i>Clostridioides difficile</i> infection

scientific article published on 01 January 2021

Characterization of the Electrochemical Behavior of Gastrointestinal Fluids Using a Multielectrode Sensor Probe

scientific article published on 02 June 2011

Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer.

scientific article

Colorectal carcinogenesis: an archetype of gut microbiota-host interaction

scientific article published on 05 September 2018

Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome

scientific article

Community analysis of dental plaque and endotracheal tube biofilms from mechanically ventilated patients.

scientific article published on 16 February 2017

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

scientific article published on 20 August 2009

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome

scientific article

Comparing the dehalogenase gene pool in cultivated alpha-halocarboxylic acid-degrading bacteria with the environmental metagene pool.

scientific article

Comparison of vaginal microbiota sampling techniques: cytobrush versus swab.

scientific article published on 29 August 2017

Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals

scientific article

Current functional metagenomic approaches only expand the existing protease sequence space, but does not presently add any novelty to it.

scientific article

Degradation of 4-fluorophenol by Arthrobacter sp. strain IF1.

scientific article published on 29 January 2008

Dietary cholesterol directly induces acute inflammasome-dependent intestinal inflammation

scientific article

Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study.

scientific article

Disturbance of the gut microbiota in early-life selectively affects visceral pain in adulthood without impacting cognitive or anxiety-related behaviors in male rats.

scientific article

Diversity of bifidobacteria within the infant gut microbiota

scientific article

Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome.

scientific article

Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses.

scientific article published on 23 August 2008

Effect of the chemical composition of filter media on the microbial community in wastewater biofilms at different temperatures

scientific article (publication date: November 2016)

Effective fecal microbiota transplantation for recurrent Clostridioides difficile infection in humans is associated with increased signalling in the bile acid-farnesoid X receptor-fibroblast growth factor pathway

scholarly article by Tanya Monaghan et al published 5 September 2018 in Gut microbes

Endoglucanase activities and growth of marine-derived fungi isolated from the sponge Haliclona simulans.

scientific article published in October 2009

Establishment of vaginal microbiota composition in early pregnancy and its association with subsequent preterm prelabor rupture of the fetal membranes

article

Evidence for plasmid-mediated salt tolerance in the human gut microbiome and potential mechanisms.

scientific article published on 4 February 2016

Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents.

scientific article published on 13 September 2011

Faecal microbiota transplant: a novel biological approach to extensively drug-resistant organism-related non-relapse mortality.

scientific article published on 17 July 2017

Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial

scientific article published on 17 July 2017

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome.

scholarly article

Functional characterisation of Lp_2714, an EAL-domain protein from Lactobacillus plantarum

scientific article published on 23 June 2011

Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome.

scientific article

Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome

scientific article

Functional microbiomics: Evaluation of gut microbiota-bile acid metabolism interactions in health and disease

article

Gut Microbiome in BALB/c and C57BL/6J Mice Undergoing Experimental Thyroid Autoimmunity Associate with Differences in Immunological Responses and Thyroid Function

scientific article published on 14 August 2018

Gut microbiology: the black box and beyond

scientific article published on 01 December 2008

Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk

scientific article

Gut microbiota modulation of chemotherapy efficacy and toxicity.

scientific article

Gut microbiota, chemotherapy and the host: the influence of the gut microbiota on cancer treatment

scientific article published on 05 September 2018

Highlights from the Inaugural International Cancer Microbiome Consortium Meeting (ICMC), 5-6 September 2017, London, UK.

scientific article published on 20 December 2017

Host-microbiota interactions: from holobiont theory to analysis

scientific article published in 2019

Human distal gut microbiome.

scientific article

Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis.

scientific article

In Vitro Modeling of Bile Acid Processing by the Human Fecal Microbiota.

scientific article published on 5 June 2018

Inhibiting Growth of Clostridioides difficile by Restoring Valerate, Produced by the Intestinal Microbiota

scientific article

Inhibition of the growth of Bacillus subtilis DSM10 by a newly discovered antibacterial protein from the soil metagenome.

scientific article

Interactions between multiple helminths and the gut microbiota in wild rodents

scientific article published on August 2015

Isolation and analysis of bacteria with antimicrobial activities from the marine sponge Haliclona simulans collected from Irish waters.

scientific article published on 25 October 2008

Isolation of novel bacteria able to degrade alpha-halocarboxylic acids by enrichment from environmental samples

scientific article published on 05 December 2005

Long term effect of gut microbiota transfer on diabetes development

scientific article

Long-term multi-species Lactobacillus and Bifidobacterium dietary supplement enhances memory and changes regional brain metabolites in middle-aged rats.

scientific article

Meeting update: faecal microbiota transplantation--bench, bedside, courtroom?

scientific article published on 4 November 2016

Metabolic Phenotyping in Personalized and Public Healthcare. List of Contributors

section of a book

Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk.

scientific article published on 14 May 2011

Metabolic, immune, and gut microbial signals mount a systems response to Leishmania major infection

scientific article

Metabonomic and microbiological analysis of the dynamic effect of vancomycin-induced gut microbiota modification in the mouse.

scientific article published on 13 August 2008

Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges.

scientific article

Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

scientific article

Metagenomics and novel gene discovery: promise and potential for novel therapeutics.

scientific article published on April 2013

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

scientific article

Microbial bile salt hydrolases mediate the efficacy of faecal microbiota transplant in the treatment of recurrent Clostridioides difficile infection

scientific article published on 11 February 2019

Microbial profiling of dental plaque from mechanically ventilated patients

scientific article published on 21 December 2015

Microbiome manipulation with faecal microbiome transplantation as a therapeutic strategy in Clostridium difficile infection

scientific article

Microbiomic analysis of the bifidobacterial population in the human distal gut.

scientific article

Minimum taxonomic criteria for bacterial genome sequence depositions and announcements.

scientific article

Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies.

scientific article

Next-generation probiotics: the spectrum from probiotics to live biotherapeutics

scientific article published on 25 April 2017

Optimized Sample Handling Strategy for Metabolic Profiling of Human Feces.

scientific article

Phylogenetic diversity and antimicrobial activities of fungi associated with Haliclona simulans isolated from Irish coastal waters.

scientific article

Rapid Detection of Emerging Pathogens and Loss of Microbial Diversity Associated with Severe Lung Disease in Cystic Fibrosis

scientific article published on 15 April 2015

Rapid and Noninvasive Metabonomic Characterization of Inflammatory Bowel Disease

scientific article published on 01 February 2007

Relationship between vaginal microbial dysbiosis, inflammation, and pregnancy outcomes in cervical cerclage

scientific article published on August 2016

Reply

Rifaximin in non-alcoholic steatohepatitis: An open-label pilot study.

scientific article published on 20 April 2017

Segregation of the Anodic Microbial Communities in a Microbial Fuel Cell Cascade

scientific article (publication date: 2016)

Species variation in the fecal metabolome gives insight into differential gastrointestinal function

scientific article

Systemic Characterization of an Obese Phenotype in the Zucker Rat Model Defining Metabolic Axes of Energy Metabolism and Host-Microbial Interactions.

scientific article

The Bacteroidales produce an N-acylated derivative of glycine with both cholesterol-solubilising and hemolytic activity.

scientific article published on 16 October 2017

The anti-cholesterolaemic effect of a consortium of probiotics: An acute study in C57BL/6J mice.

scientific article

The contribution of 'omic'-based approaches to the study of enhanced biological phosphorus removal microbiology.

scientific article published on 29 April 2009

The domestication of the probiotic bacterium Lactobacillus acidophilus.

scientific article

The gut microbiome: the role of a virtual organ in the endocrinology of the host.

scientific article published on 28 August 2013

The gut microbiota and host health: a new clinical frontier

scientific article

The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults.

scientific article

The impact of almonds and almond processing on gastrointestinal physiology, luminal microbiology, and gastrointestinal symptoms: a randomized controlled trial and mastication study

The implementation of omics technologies in cancer microbiome research

scientific article published on 05 September 2018

The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

scientific article published on 19 January 2017

The life history of Lactobacillus acidophilus as a probiotic: a tale of revisionary taxonomy, misidentification and commercial success

scientific article published on 24 October 2013

The microbiota and autoimmunity: Their role in thyroid autoimmune diseases.

scientific article

The normal intestinal microbiota.

scientific article published on October 2007

The urinary microbiome and its contribution to lower urinary tract symptoms; ICI-RS 2015.

scientific article published on April 2017

The vaginal microbiome during pregnancy and the postpartum period in a European population.

scientific article

The vaginal microbiota, human papillomavirus infection and cervical intraepithelial neoplasia: what do we know and where are we going next?

scientific article

Too much fat for the gut's microbiota

scientific article published on 20 January 2012

Towards the human colorectal cancer microbiome

scientific article

Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome.

scientific article published on 26 November 2006

Understanding the mechanisms of efficacy of fecal microbiota transplant in treating recurrent Clostridioides difficile infection and beyond: the contribution of gut microbial-derived metabolites

scientific article published on 01 November 2020

Using skimmed milk agar to functionally screen a gut metagenomic library for proteases may lead to false positives.

scientific article

Vaginal dysbiosis increases risk of preterm fetal membrane rupture, neonatal sepsis and is exacerbated by erythromycin

scientific article published on 24 January 2018

List of works by Julian R Marchesi

A bacterial driver–passenger model for colorectal cancer: beyond the usual suspects

A microplate fluorimetric assay for measuring dehalogenase activity.

A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome.

A prospective analysis of mucosal microbiome-metabonome interactions in colorectal cancer using a combined MAS 1HNMR and metataxonomic strategy

Advancing microbiome research

Advancing microbiome research

Age and microenvironment outweigh genetic influence on the Zucker rat microbiome

Antibiotic-Associated Disruption of Microbiota Composition and Function in Cirrhosis Is Restored by Fecal Transplant

Assessing the impact of long term frozen storage of faecal samples on protein concentration and protease activity

Assessment of microbiota:host interactions at the vaginal mucosa interface

Biology of the Microbiome 2: Metabolic Role.

Cervical intraepithelial neoplasia disease progression is associated with increased vaginal microbiome diversity

Changes in IgA-targeted microbiota following fecal transplantation for recurrent <i>Clostridioides difficile</i> infection

Characterization of the Electrochemical Behavior of Gastrointestinal Fluids Using a Multielectrode Sensor Probe

Colonic mucosa-associated diffusely adherent afaC+ Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer.

Colorectal carcinogenesis: an archetype of gut microbiota-host interaction

Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome

Community analysis of dental plaque and endotracheal tube biofilms from mechanically ventilated patients.

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome

Comparing the dehalogenase gene pool in cultivated alpha-halocarboxylic acid-degrading bacteria with the environmental metagene pool.

Comparison of vaginal microbiota sampling techniques: cytobrush versus swab.

Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals

Current functional metagenomic approaches only expand the existing protease sequence space, but does not presently add any novelty to it.

Degradation of 4-fluorophenol by Arthrobacter sp. strain IF1.

Dietary cholesterol directly induces acute inflammasome-dependent intestinal inflammation

Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study.

Disturbance of the gut microbiota in early-life selectively affects visceral pain in adulthood without impacting cognitive or anxiety-related behaviors in male rats.

Diversity of bifidobacteria within the infant gut microbiota

Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome.

Early life stress alters behavior, immunity, and microbiota in rats: implications for irritable bowel syndrome and psychiatric illnesses.

Effect of the chemical composition of filter media on the microbial community in wastewater biofilms at different temperatures

Effective fecal microbiota transplantation for recurrent Clostridioides difficile infection in humans is associated with increased signalling in the bile acid-farnesoid X receptor-fibroblast growth factor pathway

Endoglucanase activities and growth of marine-derived fungi isolated from the sponge Haliclona simulans.

Establishment of vaginal microbiota composition in early pregnancy and its association with subsequent preterm prelabor rupture of the fetal membranes

Evidence for plasmid-mediated salt tolerance in the human gut microbiome and potential mechanisms.

Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents.

Faecal microbiota transplant: a novel biological approach to extensively drug-resistant organism-related non-relapse mortality.

Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome.

Functional characterisation of Lp_2714, an EAL-domain protein from Lactobacillus plantarum

Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome.

Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome

Functional microbiomics: Evaluation of gut microbiota-bile acid metabolism interactions in health and disease

Gut Microbiome in BALB/c and C57BL/6J Mice Undergoing Experimental Thyroid Autoimmunity Associate with Differences in Immunological Responses and Thyroid Function

Gut microbiology: the black box and beyond

Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk

Gut microbiota modulation of chemotherapy efficacy and toxicity.

Gut microbiota, chemotherapy and the host: the influence of the gut microbiota on cancer treatment

Highlights from the Inaugural International Cancer Microbiome Consortium Meeting (ICMC), 5-6 September 2017, London, UK.

Host-microbiota interactions: from holobiont theory to analysis

Human distal gut microbiome.

Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis.

In Vitro Modeling of Bile Acid Processing by the Human Fecal Microbiota.

Inhibiting Growth of Clostridioides difficile by Restoring Valerate, Produced by the Intestinal Microbiota

Inhibition of the growth of Bacillus subtilis DSM10 by a newly discovered antibacterial protein from the soil metagenome.

Interactions between multiple helminths and the gut microbiota in wild rodents

Isolation and analysis of bacteria with antimicrobial activities from the marine sponge Haliclona simulans collected from Irish waters.

Isolation of novel bacteria able to degrade alpha-halocarboxylic acids by enrichment from environmental samples

Long term effect of gut microbiota transfer on diabetes development

Long-term multi-species Lactobacillus and Bifidobacterium dietary supplement enhances memory and changes regional brain metabolites in middle-aged rats.

Meeting update: faecal microbiota transplantation--bench, bedside, courtroom?

Metabolic Phenotyping in Personalized and Public Healthcare. List of Contributors

Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk.

Metabolic, immune, and gut microbial signals mount a systems response to Leishmania major infection

Metabonomic and microbiological analysis of the dynamic effect of vancomycin-induced gut microbiota modification in the mouse.

Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges.

Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

Metagenomics and novel gene discovery: promise and potential for novel therapeutics.

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

Microbial bile salt hydrolases mediate the efficacy of faecal microbiota transplant in the treatment of recurrent Clostridioides difficile infection

Microbial profiling of dental plaque from mechanically ventilated patients

Microbiome manipulation with faecal microbiome transplantation as a therapeutic strategy in Clostridium difficile infection

Microbiomic analysis of the bifidobacterial population in the human distal gut.

Minimum taxonomic criteria for bacterial genome sequence depositions and announcements.

Network analysis of gut microbiota literature: an overview of the research landscape in non-human animal studies.

Next-generation probiotics: the spectrum from probiotics to live biotherapeutics

Optimized Sample Handling Strategy for Metabolic Profiling of Human Feces.

Phylogenetic diversity and antimicrobial activities of fungi associated with Haliclona simulans isolated from Irish coastal waters.