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List of works by Frank M You

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

scientific article published on 22 April 2013

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

scientific article

A Second Generation Integrated Map of the Rainbow Trout (Oncorhynchus mykiss) Genome: Analysis of Conserved Synteny with Model Fish Genomes ⬇️

scientific article published on November 19, 2011

A first generation BAC-based physical map of the rainbow trout genome

scientific article

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening ⬇️

scientific article published on December 6, 2010

A phenylpropanoid diglyceride associates with the leaf rust resistance Lr34res gene in wheat

scientific article published on 17 July 2020

A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.

scientific article published on 9 May 2016

Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

scientific article published on 04 February 2013

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence ⬇️

scientific article published on January 25, 2011

BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes

scientific article

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

scientific article

Cassava genome from a wild ancestor to cultivated varieties ⬇️

scientific article

Characterizing the walnut genome through analyses of BAC end sequences.

scientific article

Chromosome-scale pseudomolecules refined by optical, physical, and genetic maps in flax.

scientific article published on 22 April 2018

Collinearity-based marker mining for the fine mapping of Pm6, a powdery mildew resistance gene in wheat ⬇️

scientific article published on April 6, 2011

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon

scientific article published on 20 May 2011

Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosomes

article

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

scientific article

Deletion polymorphism in wheat chromosome regions with contrasting recombination rates

scientific article published on November 2004

Development of Microsatellite Markers in Tung Tree (Vernicia fordii) Using Cassava Genomic Sequences

scientific article published in 2014

Disease Resistance Gene Analogs (RGAs) in Plants

scientific article

Dominant inhibition of awn development by a putative zinc-finger transcriptional repressor expressed at the B1 locus in wheat

scientific article published on 10 October 2019

Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

scientific article

Evaluation of Genomic Prediction for Pasmo Resistance in Flax

scientific article published on 16 January 2019

Evaluation of variant calling tools for large plant genome re-sequencing

scientific article published on 17 August 2020

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

scientific article

GSP: a web-based platform for designing genome-specific primers in polyploids

scientific article published on 9 March 2016

Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.).

scientific article published on 21 September 2017

Genetic mapping of SrCad and SNP marker development for marker-assisted selection of Ug99 stem rust resistance in wheat

scientific article published on 18 April 2016

Genetic variation of six desaturase genes in flax and their impact on fatty acid composition ⬇️

scientific article published on August 9, 2013

Genetics and mapping of seedling resistance to Ug99 stem rust in winter wheat cultivar Triumph 64 and differentiation of SrTmp, SrCad, and Sr42.

scientific article

GenoProfiler: batch processing of high-throughput capillary fingerprinting data

scientific article

Genome resources for climate-resilient cowpea, an essential crop for food security

scientific article

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

scientific article

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries ⬇️

scientific article published on December 6, 2012

Genome-Wide Association Analysis of Mucilage and Hull Content in Flax ( L.) Seeds

scholarly article by Braulio J Soto-Cerda published in September 2018

Genome-Wide Association Studies for Pasmo Resistance in Flax (.)

article published in 2018

Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax

scientific article published on 06 August 2018

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

scientific article

Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.).

scientific article

Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.).

scientific article published on 19 October 2020

Genome-wide introgression from a bread wheat × Lophopyrum elongatum amphiploid into wheat

scientific article published on 24 January 2020

Genomic Prediction Accuracy of Seven Breeding Selection Traits Improved by QTL Identification in Flax

scientific article published on 25 February 2020

Genomic organization of the complex alpha-gliadin gene loci in wheat

scientific article published on 22 April 2004

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

scientific article

Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16

scientific article

Identification of New Leaf Rust Resistance Loci in Wheat and Wild Relatives by Array-Based SNP Genotyping and Association Genetics

scientific article published on 16 November 2020

Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).

scientific article

Insular organization of gene space in grass genomes

scientific article

Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.).

scientific article published on 8 March 2014

Loci harboring genes with important role in drought and related abiotic stress responses in flax revealed by multiple GWAS models

scientific article published on 12 October 2020

Mapping Quantitative Trait Loci onto Chromosome-Scale Pseudomolecules in Flax

scientific article published on 04 April 2020

Mapping and validation of quantitative trait loci associated with wheat yellow mosaic bymovirus resistance in bread wheat ⬇️

scientific article published on September 30, 2011

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

scientific article

PIECE 2.0: an update for the plant gene structure comparison and evolution database

scientific article published on 13 October 2016

PIECE: a database for plant gene structure comparison and evolution.

scientific article

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

scientific article

Plant Genomics—Advancing Our Understanding of Plants

scientific article published in 2023

Pseudogenes and Their Genome-Wide Prediction in Plants

scientific article

QTL for fatty acid composition and yield in linseed (Linum usitatissimum L.).

scientific article published on 08 March 2015

Quantitative Trait Locus Mapping of Marsh Spot Disease Resistance in Cranberry Common Bean (Phaseolus vulgaris L.)

scientific article published in 2022

RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

scientific article

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

scientific article

Rht23 (5Dq') likely encodes a Q homeologue with pleiotropic effects on plant height and spike compactness

scientific article published on 31 May 2018

Sequencing a  ×  hybrid yields high-quality genome assemblies of parental species

scientific article published on 25 March 2019

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

scientific article published on 07 August 2015

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat

scientific article

Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size

scientific article published on 17 June 2018

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

scientific article

The Complex Genetic Architecture of Early Root and Shoot Traits in Flax Revealed by Genome-Wide Association Analyses

scientific article published on 19 November 2019

The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum.

scientific article published in October 2005

The genetic structure of flax illustrates environmental and anthropogenic selections that gave rise to its eco-geographical adaptation

scientific article published on 09 April 2019

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

scientific article published on 6 November 2007

The origin of spelt and free-threshing hexaploid wheat

scientific article

Transcriptional profiling of wheat caryopsis development using cDNA microarrays.

scientific article published on 9 January 2007

Transferability of microsatellite markers from Brachypodium distachyon to Miscanthus sinensis, a potential biomass crop.

scientific article published in March 2011

UGT74S1 is the key player in controlling secoisolariciresinol diglucoside (SDG) formation in flax

scientific article

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