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List of works by Bart De Moor

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

scientific article

A Simple Genetic Algorithm for Biomarker Mining

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs

A calibration method for estimating absolute expression levels from microarray data

scientific article

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

article

A guide to web tools to prioritize candidate genes

scientific article published on 21 March 2010

A kernel-based integration of genome-wide data for clinical decision support

scientific article

A seven-gene set associated with chronic hypoxia of prognostic importance in hepatocellular carcinoma

scientific article published on 30 June 2010

A taxonomy of epithelial human cancer and their metastases

scientific article

A tutorial on support vector machine-based methods for classification problems in chemometrics

scientific article published on 24 March 2010

ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart

scientific article published in Scientific Reports

Adaptive quality-based clustering of gene expression profiles.

scientific article published in May 2002

An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH.

scientific article

An unbiased evaluation of gene prioritization tools

article

Approximate confidence and prediction intervals for least squares support vector regression

scientific article published in November 2010

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes

scientific article published on September 2007

Assessing first trimester growth: the influence of ethnic background and maternal age

scientific article published on 02 December 2008

Association of the Vascular Endothelial Growth Factor Gene Polymorphisms (-460C/T, +405G/C and +936T/C) with Endometriosis: A Meta-Analysis

article

Automated anatomical interpretation of ion distributions in tissue: linking imaging mass spectrometry to curated atlases

scientific article

Bayesian applications of belief networks and multilayer perceptrons for ovarian tumor classification with rejection

scientific article published on September 2003

Biclustering microarray data by Gibbs sampling

scientific article

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

scientific article

Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars

Biomarkers of endometriosis

scientific article published on 13 February 2013

CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.

scientific article

COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms.

scientific article

Characterization of the condensin component Cnap1 and protein kinase Melk as novel E2F target genes down-regulated by 1,25-dihydroxyvitamin D3.

scientific article

Clinical data miner: an electronic case report form system with integrated data preprocessing and machine-learning libraries supporting clinical diagnostic model research

scientific article

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

scientific article published in October 2003

Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium

scientific article published in April 2005

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

scientific article published on August 2008

Comprehensive analysis of the base composition around the transcription start site in Metazoa

scientific article

Computational detection of cis -regulatory modules.

scientific article

Coxsackievirus B1 peritonitis in a patient treated with continuous ambulatory peritoneal dialysis: a case report and brief review of the literature.

scientific article published on 07 August 2012

Current animal models for the study of congestion in heart failure: an overview

scientific article published on 01 May 2019

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

scientific article

Detecting cis-regulatory binding sites for cooperatively binding proteins

scientific article published on 9 April 2008

Development of a kernel function for clinical data

scientific article

Discovering transcriptional modules from motif, chip-chip and microarray data.

scientific article

ENDEAVOUR update: a web resource for gene prioritization in multiple species

scientific article

Ectopic pregnancy: using the hCG ratio to select women for expectant or medical management

scientific article published on 13 January 2011

Endurance Exercise Intervention Is Beneficial to Kidney Function in a Rat Model of Isolated Abdominal Venous Congestion: a Pilot Study

scientific article published on 17 December 2019

Evaluation of endometrial biomarkers for semi-invasive diagnosis of endometriosis ⬇️

scientific article published on August 30, 2010

Exercise intervention in hospitalized heart failure patients, with emphasis on congestion-related complications: a review

scientific article published on 01 March 2020

Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation

scientific article

Fluctuations of haemoglobinaemia in chronic haemodialysis patients.

scientific article published in March 2011

Follicle stimulating hormone receptor G-29A, 919A>G, 2039A>G polymorphism and the risk of male infertility: A meta-analysis

article

Gene prioritization and clustering by multi-view text mining

scientific article

Gene prioritization through genomic data fusion

scientific article published in May 2006

Gene profiling of hippocampal neuronal culture.

scientific article published in June 2003

Genome-specific higher-order background models to improve motif detection.

scientific article published in February 2003

Globally Optimal SISO H<sub>2</sub>-Norm Model Reduction Using Walsh’s Theorem

scientific article published in 2023

Gradient boosted trees with individual explanations: An alternative to logistic regression for viability prediction in the first trimester of pregnancy

scientific article published on 10 November 2021

Haemodynamic or metabolic stimulation tests to reveal the renal functional response: requiem or revival?

INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis

scientific article

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling

scientific article published in February 2002

Importing MAGE-ML format microarray data into BioConductor

scientific article

Improved microarray-based decision support with graph encoded interactome data

scientific article

Improved modeling of clinical data with kernel methods.

scientific article

In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection

scientific article

Inferring transcriptional modules from ChIP-chip, motif and microarray data

scientific article

Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer.

scientific article

Integration of clinical and microarray data with kernel methods

scientific article

International Endometrial Tumor Analysis (IETA) terminology in women with postmenopausal bleeding and sonographic endometrial thickness ≥4.5 mm: an agreement and reliability study

scientific article

Intrinsic gene expression profiles of gliomas are a better predictor of survival than histology.

scientific article published on 17 November 2009

L2-norm multiple kernel learning and its application to biomedical data fusion.

scientific article

Layout and Post-Processing of Transcriptional Modules

Low rank updated LS-SVM classifiers for fast variable selection

scientific article

MARAN: normalizing micro-array data ⬇️

scientific article published on May 1, 2003

Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

scientific article published in April 2007

Maximum Likelihood Estimation of GEVD: Applications in Bioinformatics

scientific article published on July 2014

Microarray analysis of MCF-7 breast cancer cells treated with 1,25-dihydroxyvitamin D3 or a 17-methyl-D-ring analog.

scientific article

Microarray screening for target genes of the proto-oncogene PLAG1.

scientific article published on January 2004

ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules

scientific article

ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

scientific article published on 07 April 2008

Molecular profiling of platinum resistant ovarian cancer: Use of the model in clinical practice

scientific article published on 01 September 2006

Molecular response to cetuximab and efficacy of preoperative cetuximab-based chemoradiation in rectal cancer

scientific article

More robust detection of motifs in coexpressed genes by using phylogenetic information.

scientific article published on 20 March 2006

Mortality in Individuals Treated With Glucose-Lowering Agents: A Large, Controlled Cohort Study

scientific article published on 17 December 2015

Multiplex immunoassays in endometriosis: An array of possibilities.

scientific article published on January 2017

New bandwidth selection criterion for Kernel PCA: approach to dimensionality reduction and classification problems

scientific article

O12: Text Mining for Constitutional Cytogenetics

Occurrence and outcome of residual trophoblastic tissue: a prospective study

scientific article published on 01 March 2008

Optimized data fusion for K-means Laplacian clustering

scientific article

Optimized data fusion for kernel k-means clustering

scientific article

PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability.

scientific article

Predicting breast cancer using an expression values weighted clinical classifier

scientific article

Predicting receptor-ligand pairs through kernel learning

scientific article

Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.

scientific article

Prediction of cancer outcome using DNA microarray technology: past, present and future.

scientific article

Problems with the nested granularity of feature domains in bioinformatics: the eXtasy case

scientific article

Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis.

scientific article

Proteomic biomarkers predicting lymph node involvement in serum of cervical cancer patients. Limitations of SELDI-TOF MS.

scientific article

Proteomics analysis of plasma for early diagnosis of endometriosis

scientific article

Query-driven module discovery in microarray data.

scientific article

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

scientific article

Recurrent copy number alterations in BRCA1-mutated ovarian tumors alter biological pathways.

scientific article

Regulation of semaphorin 3 family members and their receptors by 1α,25-dihydroxyvitamin D3

Reply of the Authors

scientific article published on 15 August 2013

Segmentation of time series from nonlinear dynamical systems

Selective abdominal venous congestion induces adverse renal and hepatic morphological and functional alterations despite a preserved cardiac function

scientific article published in Scientific Reports

Severe diarrhea in renal transplant patients: results of the DIDACT study

scientific article published on 01 June 2006

Spatially aware clustering of ion images in mass spectrometry imaging data using deep learning

scientific article published on 01 March 2021

Supervised classification of array CGH data with HMM-based feature selection

scientific article

SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms

scientific article

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

scientific article

TXTGate: profiling gene groups with text-based information

scientific article

The acute kidney injury e-alert and clinical care bundles: the road to success is always under construction

scientific article published on 02 June 2016

The condition-dependent transcriptional network in Escherichia coli

scientific article published in March 2009

The differogram: Non-parametric noise variance estimation and its use for model selection

The effect of orthology and coregulation on detecting regulatory motifs

scientific article

The use of laser microdissection and SELDI-TOF MS in ovarian cancer tissue to identify protein profiles.

scientific article

The value of tuberculin skin testing in haemodialysis patients.

scientific article published in February 2004

Toucan: deciphering the cis-regulatory logic of coregulated genes.

scientific article

Towards Better Prioritization of Epigenetically Modified DNA Regions

Two Double Recursive Block Macaulay Matrix Algorithms to Solve Multiparameter Eigenvalue Problems

scientific article published in 2023

Two complementary block Macaulay matrix algorithms to solve multiparameter eigenvalue problems

scientific article published in 2022

Using literature and data to learn Bayesian networks as clinical models of ovarian tumors

scientific article

ViTraM: visualization of transcriptional modules

scientific article published on 8 July 2009

Why are some ectopic pregnancies characterized as pregnancies of unknown location at the initial transvaginal ultrasound examination?

scientific article

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

scientific article

eXtasy: variant prioritization by genomic data fusion.

scientific article

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