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List of works by Tomasz Borowski

4-Hydroxyphenylpyruvate dioxygenase: a hybrid density functional study of the catalytic reaction mechanism.

scientific article published in September 2004

A comparison of the reaction mechanisms of iron- and manganese-containing 2,3-HPCD: an important spin transition for manganese.

scientific article published on 6 May 2008

A hybrid density functional study of O-O bond cleavage and phenyl ring hydroxylation for a biomimetic non-heme iron complex.

scientific article

A single amino acid substitution within catalytically non-active N-terminal domain of catechol 2,3-dioxygenase (C23O) increases enzyme activity towards 4-chlorocatechol

A study on the structure, mechanism and biochemistry of kanamycin B dioxygenase (KanJ) - an enzyme with a broad range of substrates

scientific article published on 27 June 2020

Ab initio modeling of ethylbenzene dehydrogenase reaction mechanism

scientific article

Anion Effects in Oxidative Aliphatic Carbon-Carbon Bond Cleavage Reactions of Cu(II) Chlorodiketonate Complexes

scientific article published on 5 July 2016

Catalytic Reaction Mechanism of Lipoxygenase. A Density Functional Theory Study

scientific article published on 16 April 2003

Catalytic Reaction Mechanism of Oxalate Oxidase (Germin). A Hybrid DFT Study

scientific article published on 01 July 2005

Catalytic reaction mechanism of homogentisate dioxygenase: a hybrid DFT study

scientific article

Chapter 4. Density Functional Theory Studies on Non-heme Iron Enzymes

Characteristics of the ligand-binding site interaction for a series of arecoline-derived muscarinic agonists: a quantum chemical study

scientific article published on 01 May 2000

Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus

scientific article published on 24 September 2020

Comparison of QM-only and QM/MM models for the mechanism of tyrosinase

scientific article published on 01 January 2011

Comparison of different approaches to derive classical bonded force-field parameters for a transition metal cofactor: a case study for non-heme iron site of ectoine synthase

scientific article published on 29 July 2021

Crystal structure of thebaine 6-O-demethylase from the morphine biosynthesis pathway.

scientific article published on 2 February 2018

Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity

scientific article

DFT study of the mechanism of manganese quercetin 2,3-dioxygenase: quest for origins of enzyme unique nitroxygenase activity and regioselectivity

scientific article published on 11 May 2016

DFT study of the uncatalyzed dioxygenation of acireductone

DFT study on the catalytic reactivity of a functional model complex for intradiol-cleaving dioxygenases.

scientific article published in May 2010

Distinct Lipid Transfer Proteins display different IgE-binding activities that are affected by fatty acid binding

scientific article published on 16 December 2018

Enhanced Pru p 3 IgE-binding activity by selective free fatty acid-interaction.

scientific article

Enzymatic Δ 1 -Dehydrogenation of 3-Ketosteroids—Reconciliation of Kinetic Isotope Effects with the Reaction Mechanism

scientific article published on 20 June 2021

Enzyme multifunctionality via control of substrate positioning within the catalytic cycle - a QM/MM study for clavaminic acid synthase

scientific article published on 03 November 2020

Epimerization and desaturation by carbapenem synthase (CarC). A hybrid DFT study

scientific article published in April 2006

Ethylene biosynthesis by 1-aminocyclopropane-1-carboxylic acid oxidase: a DFT study

scientific article published in November 2006

First Principle Calculations for the Non-Heme Iron Centers of Lipoxygenases: Geometrical and Spectral Properties

First-principle calculations for the active centers in vanadium-containing chloroperoxidase and its functional models: Geometrical and spectral properties

Force-field parametrization and molecular dynamics simulations of Congo red.

scientific article published in January 2004

Frontispiece: Properties of the Reactants and Their Interactions within and with the Enzyme Binding Cavity Determine Reaction Selectivities. The Case of Fe(II)/2‐Oxoglutarate Dependent Enzymes

scientific article published on 28 March 2022

Group Transfer to an Aliphatic Bond: A Biomimetic Study Inspired by Nonheme Iron Halogenases

Halide-promoted dioxygenolysis of a carbon-carbon bond by a copper(II) diketonate complex

scientific article published on 27 May 2014

Impact of lipid binding on the tertiary structure and allergenic potential of Jug r 3, the non-specific lipid transfer protein from walnut

scientific article published in Scientific Reports

It takes two to tango - The case of thebaine 6-O-demethylase

scientific article published on 07 July 2020

Mechanism for catechol ring cleavage by non-heme iron intradiol dioxygenases: a hybrid DFT study.

scientific article

Mechanism for cyclization reaction by clavaminic acid synthase. Insights from modeling studies

scientific article published on 27 February 2007

Mechanism of Sulfate Activation Catalyzed by ATP Sulfurylase - Magnesium Inhibits the Activity

scientific article published on 18 June 2019

Mechanism of benzylic hydroxylation by 4-hydroxymandelate synthase. A computational study

scientific article published on 12 November 2012

Mechanism of dioxygen activation in 2-oxoglutarate-dependent enzymes: a hybrid DFT study.

scientific article published in February 2004

Mechanism of selective halogenation by SyrB2: a computational study.

scientific article published on September 2010

Mechanistic Studies of the O2-Dependent Aliphatic Carbon−Carbon Bond Cleavage Reaction of a Nickel Enolate Complex

scientific article published on 11 January 2011

Mechanistic basis for the enantioselectivity of the anaerobic hydroxylation of alkylaromatic compounds by ethylbenzene dehydrogenase

scientific article published on 27 May 2014

Mechanistic studies of visible light-induced CO release from a 3-hydroxybenzo[]quinolone

scientific article published on 18 January 2022

Modeling enzymatic reactions involving transition metals

scientific article published on 01 October 2006

On how the binding cavity of AsqJ dioxygenase controls the desaturation reaction regioselectivity: a QM/MM study.

scientific article

On structure and reaction mechanism of human acireductone dioxygenase.

scientific article published on 28 November 2017

On the Catalytic Mechanism of (S)‐2‐Hydroxypropylphosphonic Acid Epoxidase (HppE): A Hybrid DFT Study ⬇️

scientific article published on November 13, 2012

On the observation of a gem diol intermediate after O-O bond cleavage by extradiol dioxygenases. A hybrid DFT study

scientific article published on 18 February 2010

On the reaction mechanism of an endoperoxide ring formation by fumitremorgin B endoperoxidase. The right arrangement makes a difference

scientific article published on 03 October 2019

Oxoferryl species in mononuclear non-heme iron enzymes: Biosynthesis, properties and reactivity from a theoretical perspective

scientific article published in January 2013

Oxygen Activation by Rieske Non-Heme Iron Oxygenases, a Theoretical Insight

scientific article published in August 2004

Properties of the Reactants and Their Interactions within and with the Enzyme Binding Cavity Determine Reaction Selectivities. The Case of Fe(II)/2‐Oxoglutarate Dependent Enzymes

scientific article published on 27 January 2022

Quantum Mechanics/Molecular Mechanics Modeling of Enzymatic Processes: Caveats and Breakthroughs.

scientific article published on 23 December 2015

Quantum chemical modeling studies of ethylbenzene dehydrogenase activity

scientific article published on 31 May 2011

Quantum chemical studies of dioxygen activation by mononuclear non-heme iron enzymes with the 2-His-1-carboxylate facial triad.

scientific article published on 27 August 2004

Quantum chemical studies of mechanisms for metalloenzymes.

scientific article published on 13 January 2014

Reaction mechanism between Cu(II)-enolate complex and O2 as a test case for methodology used in DFT computational studies

scientific article published on 24 April 2019

Reaction mechanism catalyzed by the dissimilatory Adenosine 5'-Phosphosulfate Reductase. Adenosine 5'-monophosphate inhibitor and key role of Arginine 317 in switching the course of catalysis

scientific article published on 29 October 2020

Reaction mechanism of apocarotenoid oxygenase (ACO): a DFT study.

scientific article published in January 2008

Regioselectivity of hyoscyamine 6β-hydroxylase-catalysed hydroxylation as revealed by high-resolution structural information and QM/MM calculations

scientific article published on 01 April 2020

Role of substrate positioning in the catalytic reaction of 4-hydroxyphenylpyruvate dioxygenase-A QM/MM Study.

scientific article published on 16 September 2014

Structural and Functional Characterization of the Hazelnut Allergen Cor a 8

scientific article

Structural and functional characterization of an intradiol ring-cleavage dioxygenase from the polyphagous spider mite herbivore Tetranychus urticae Koch

scientific article published on 05 December 2018

Substitution of histidine 30 by asparagine in manganese superoxide dismutase alters biophysical properties and supports proliferation in a K562 leukemia cell line

scientific article published in May 2021

Synthesis and the crystal structure of dimeric 1-hydroxyhexane-2,3-dione and the spectral characteristics of a model acireductone

scientific article published in 2016

The alkenyl migration mechanism catalyzed by extradiol dioxygenases: a hybrid DFT study

scientific article published on 24 May 2012

The mechanism of the reaction of intradiol dioxygenase with hydroperoxy probe

scientific article published in July 2011

The reaction mechanism of chiral hydroxylation of p -OH and p -NH 2 substituted compounds by ethylbenzene dehydrogenase

scientific article published in September 2013

Theoretical studies of enzyme mechanisms involving high-valent iron intermediates.

scientific article

Theoretical study of the catalytic reaction mechanism of MndD.

scientific article

Time-dependent DFT study on electronic states of vanadium and molybdenum oxide molecules

scientific article published in May 2001

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