List of works - Aleksej Zelezniak

A time-resolved proteomic and prognostic map of COVID-19

scientific article published on 14 June 2021

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

scientific article

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

scientific article published on 24 March 2020

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

scientific article published on 23 February 2021

Computational scoring and experimental evaluation of enzymes generated by neural networks

scientific article published in 2024

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes

scientific article

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

scientific article

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

scientific article published on 01 December 2020

Expanding functional protein sequence spaces using generative adversarial networks

scientific article

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

scientific article published on 11 January 2011

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

scientific article published on 28 September 2016

Learning deep representations of enzyme thermal adaptation

scientific article published in December 2022

Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts

scientific article published on 05 September 2018

Metabolic dependencies drive species co-occurrence in diverse microbial communities

scientific article published on 4 May 2015

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes

scientific article

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

scientific article published on 19 March 2018

Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends

article by Jan Zrimec et al published 26 October 2021 in mBio

Plastic-degrading potential across the global microbiome correlates with recent pollution trends

preprint

Precise label-free quantitative proteomes in high-throughput by microLC and data-independent SWATH acquisition

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours

scientific journal article

Supervised generative design of regulatory DNA for gene expression control

The metabolic background is a global player in Saccharomyces gene expression epistasis

scientific article published on February 2016

The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization.

scientific article published on 10 July 2017

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes

scientific article published on 01 December 2021

List of works by Aleksej Zelezniak

A time-resolved proteomic and prognostic map of COVID-19

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

Computational scoring and experimental evaluation of enzymes generated by neural networks

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

Expanding functional protein sequence spaces using generative adversarial networks

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Learning deep representations of enzyme thermal adaptation

Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts

Metabolic dependencies drive species co-occurrence in diverse microbial communities

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends

Plastic-degrading potential across the global microbiome correlates with recent pollution trends

Precise label-free quantitative proteomes in high-throughput by microLC and data-independent SWATH acquisition

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours

Supervised generative design of regulatory DNA for gene expression control

The metabolic background is a global player in Saccharomyces gene expression epistasis

The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization.

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes