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List of works by David R Johnson

A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes.

scientific article

A brief guide for the measurement and interpretation of microbial functional diversity

scientific article published on 30 June 2020

A conceptual framework for invasion in microbial communities ⬇️

scientific article published on 3 May 2016

A framework for establishing predictive relationships between specific bacterial 16S rRNA sequence abundances and biotransformation rates.

scientific article published on 16 December 2014

A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations

scientific article

A real-time PCR method for quantifying viable ascaris eggs using the first internally transcribed spacer region of ribosomal DNA.

scientific article

An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene.

scientific article

Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis

scientific article

Bridging the Holistic-Reductionist Divide in Microbial Ecology

scientific article published on 01 January 2019

Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products?

scientific article published on 25 March 2015

Comparing the Resistance, Resilience, and Stability of Replicate Moving Bed Biofilm and Suspended Growth Combined Nitritation-Anammox Reactors

scientific article

Effect of carbon starvation on toluene degradation activity by toluene monooxygenase-expressing bacteria.

scientific article published on 14 February 2006

Engineering microbial consortia for controllable outputs

scientific article published on 11 March 2016

Environmental connectivity controls diversity in soil microbial communities

scientific article published on 22 April 2021

Generality of associations between biological richness and the rates of metabolic processes across microbial communities

scientific article published on 07 August 2018

Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1 ⬇️

scientific article published on August 23, 2012

Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply.

scientific article published on 9 February 2013

Initial community composition determines the long-term dynamics of a microbial cross-feeding interaction by modulating niche availability

scientific article published in 2022

Interaction-dependent effects of surface structure on microbial spatial self-organization

scientific article published on 23 March 2020

Metabolic specialization and the assembly of microbial communities

scientific article

Metabolite toxicity determines the pace of molecular evolution within microbial populations

scientific article

Metabolite toxicity slows local diversity loss during expansion of a microbial cross-feeding community.

scientific article

Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities

scientific article published on 20 February 2019

Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp.

scientific article

Relating Metatranscriptomic Profiles to the Micropollutant Biotransformation Potential of Complex Microbial Communities

scientific article published on 12 December 2019

Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation.

scientific article published on 22 November 2016

Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates

scientific article published on 15 January 2016

Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages

scientific article published on 18 November 2020

Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage.

scientific article published on 20 June 2019

Successive range expansion promotes diversity and accelerates evolution in spatially structured microbial populations

scientific article published on 23 May 2017

Synthetic microbial ecology and the dynamic interplay between microbial genotypes

scientific article published on November 2016

The activity level of a microbial community function can be predicted from its metatranscriptome ⬇️

scientific article published on November 17, 2011

The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability

scientific article

Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry

scientific article

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.

scientific article

Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii.

scientific article

Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes

article

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