Search filters

List of works by Jason Hinds

005.2 Diagnostic and clinical implications of genotypic fluoroquinolone susceptibility detection forneisseria gonorrhoeae

A Hidden Markov model web application for analysing bacterial genomotyping DNA microarray experiments

scientific article published in January 2006

A cross-sectional observational study of pneumococcal carriage in children, their parents, and older adults following the introduction of the 7-valent pneumococcal conjugate vaccine

scientific article

A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor

scientific journal article

A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor

article

A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae.

scientific article

A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji

scientific article published on 20 July 2017

A point mutation in cpsE renders Streptococcus pneumoniae nonencapsulated and enhances its growth, adherence and competence

scientific article

A rhodanine agent active against non-replicating intracellular Mycobacterium avium subspecies paratuberculosis

scientific article published on 23 December 2009

Accurate detection of Neisseria gonorrhoeae ciprofloxacin susceptibility directly from genital and extragenital clinical samples: towards genotype-guided antimicrobial therapy.

scientific article published on 26 January 2016

Advanced significance analysis of microarray data based on weighted resampling: a comparative study and application to gene deletions in Mycobacterium bovis

scientific article

Analysis of whole-genome microarray replicates using mixed models.

scientific article published in January 2003

Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis

scientific article

Application of comparative phylogenomics to study the evolution of Yersinia enterocolitica and to identify genetic differences relating to pathogenicity

scientific article published on May 2006

BmuG@Sbase--a microarray database and analysis tool

scientific article published on January 2002

BμG@Sbase--a microbial gene expression and comparative genomic database

scientific article published on 24 September 2011

Campylobacter jejuni gene expression in the chick cecum: evidence for adaptation to a low-oxygen environment

scientific article published on August 2005

Carriage of Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus in Indonesian children: A cross-sectional study

scientific article published on 12 April 2018

Characterization of two in vivo-expressed methyltransferases of the Mycobacterium tuberculosis complex: antigenicity and genetic regulation

scientific article

Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases

scientific article

Clinical use of whole genome sequencing for Mycobacterium tuberculosis

scientific article

Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains

scientific article published on October 2006

Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans

scientific article

Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source

scientific article

Comparative transcriptomics reveals key gene expression differences between the human and bovine pathogens of the Mycobacterium tuberculosis complex

scientific article published on October 2007

Comparison of two-dose priming plus 9-month booster with a standard three-dose priming schedule for a ten-valent pneumococcal conjugate vaccine in Nepalese infants: a randomised, controlled, open-label, non-inferiority trial

scientific article published on 18 February 2015

Construction and analysis of chromosomal Clostridium difficile mutants

scientific article published on September 2006

Construction of a Yersinia pestis microarray

scientific article published on January 2003

Contrasting transcriptional responses of a virulent and an attenuated strain of Mycobacterium tuberculosis infecting macrophages

scientific article

Cytological and transcript analyses reveal fat and lazy persister-like bacilli in tuberculous sputum

scientific article

DNA microarrays for virus detection in cases of central nervous system infection

scientific article published on December 2004

Decrease in pneumococcal co-colonization following vaccination with the seven-valent pneumococcal conjugate vaccine

scientific article (publication date: 2012)

Defective pneumococcal-specific Th1 responses in HIV-infected adults precedes a loss of control of pneumococcal colonization

scientific article published on 28 September 2012

Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the sigma54-dependent regulon in Campylobacter jejuni

scientific article published in September 2007

Deletion of the Zinc Transporter Lipoprotein AdcAII Causes Hyperencapsulation of Streptococcus pneumoniae Associated with Distinct Alleles of the Type I Restriction-Modification System

scientific article published on 31 March 2020

Design, validation, and application of a seven-strain Staphylococcus aureus PCR product microarray for comparative genomics

scientific article published on November 2005

Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group.

scientific article

Determining the pneumococcal conjugate vaccine coverage required for indirect protection against vaccine-type pneumococcal carriage in low and middle-income countries: a protocol for a prospective observational study.

scientific article

Development and application of the active surveillance of pathogens microarray to monitor bacterial gene flux

scientific article

Discovery of Stable and Variable Differences in the Mycobacterium avium subsp. paratuberculosis Type I, II, and III Genomes by Pan-Genome Microarray Analysis

scientific article

Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene

scientific article published in PLoS ONE

Discovery of aStreptococcus pneumoniaeserotype 33F capsular polysaccharide locus that lackswcjEand contains awcyOpseudogene

Discovery of stable and variable differences in the Mycobacterium avium subsp. paratuberculosis type I, II, and III genomes by pan-genome microarray analysis

scientific article published on December 2008

Dissection of ESAT-6 system 1 of Mycobacterium tuberculosis and impact on immunogenicity and virulence

scientific article

Dissection of the heat-shock response in Mycobacterium tuberculosis using mutants and microarrays

scientific journal article

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

scientific article (publication date: 2013)

Effect of FliK mutation on the transcriptional activity of the {sigma}54 sigma factor RpoN in Helicobacter pylori

scientific article published on 21 April 2009

Effect of ten-valent pneumococcal conjugate vaccine introduction on pneumococcal carriage in Fiji: results from four annual cross-sectional carriage surveys

Empirical Bayesian models for analysing molecular serotyping microarrays

scientific article

Erratum to “Genome analysis shows a common evolutionary origin for the dominant strains of Mycobacterium tuberculosis in a UK South Asian community” [Tuberculosis 87 (2007) 426–436]

article

Evaluation of pneumococcal serotyping in nasopharyngeal carriage isolates by latex agglutination, whole genome sequencing (PneumoCaT) and DNA microarray in a high pneumococcal carriage prevalence population in Malawi

scientific article published on 21 October 2020

Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

scientific article

Explorative multifactor approach for investigating global survival mechanisms of Campylobacter jejuni under environmental conditions

scientific article

Gene expression profile of Mycobacterium tuberculosis in a non-replicating state

scientific article

Genetic composition of Mycobacterium bovis BCG substrain Sofia

scientific article published in November 2003

Genetic variation in spatio-temporal confined USA300 community-associated MRSA isolates: a shift from clonal dispersion to genetic evolution?

scientific article

Genome analysis shows a common evolutionary origin for the dominant strains of Mycobacterium tuberculosis in a UK South Asian community

scientific article

Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa

scientific article published on 8 February 2014

Genome structure in the vole bacillus, Mycobacterium microti, a member of the Mycobacterium tuberculosis complex with a low virulence for humans

scientific article

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

scientific article

Genomic analysis of Mycobacterium tuberculosis complex strains used for production of purified protein derivative

scientific article

Genomic diversity among Beijing and non-Beijing Mycobacterium tuberculosis isolates from Myanmar

scientific article

Genomic diversity between strains of the same serotype and multilocus sequence type among pneumococcal clinical isolates

scientific article

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

scientific article published on 21 March 2011

Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus

scientific article

High levels of recombination among Streptococcus pneumoniae isolates from the Gambia

scientific article

High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children.

scientific article published on 20 June 2015

Identification of Streptococcus pneumoniae by a real-time PCR assay targeting SP2020

Identification of Streptococcus suis Meningitis through Population-Based Surveillance, Togo, 2010-2014.

scientific article published on July 2016

Identification of genetic markers forMycobacterium pinnipediithrough genome analysis

scientific article published on 01 July 2005

Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species

scientific article published in September 2005

Impact of 13-Valent Pneumococcal Conjugate Vaccine on Colonization and Invasive Disease in Cambodian Children

scientific article published on 01 April 2020

Impact of the 13-valent pneumococcal conjugate vaccine on Streptococcus pneumoniae multiple serotype carriage

scientific article published on 17 June 2016

Improved detection of nasopharyngeal cocolonization by multiple pneumococcal serotypes by use of latex agglutination or molecular serotyping by microarray

scientific article

Influence of tigecycline on expression of virulence factors in biofilm-associated cells of methicillin-resistant Staphylococcus aureus

scientific article

Insertion of epicatechin gallate into the cytoplasmic membrane of methicillin-resistant Staphylococcus aureus disrupts penicillin-binding protein (PBP) 2a-mediated beta-lactam resistance by delocalizing PBP2.

scientific article published on June 2010

Insights into pneumococcal pneumonia using lung aspirates and nasopharyngeal swabs collected from pneumonia patients in The Gambia

scientific article published on 22 April 2020

Low-shear modelled microgravity alters expression of virulence determinants of Staphylococcus aureus

Microarray analysis of Mycobacterium microti reveals deletion of genes encoding PE-PPE proteins and ESAT-6 family antigens

scientific article published on January 2004

Microarray-based comparative genomics: genome plasticity in Mycobacterium bovis

scientific article

Microarrays for Microbes: the BmuG@S Approach.

scientific article published on January 2002

Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes

scientific article published on January 2006

Multi-serotype pneumococcal nasopharyngeal carriage prevalence in vaccine naïve Nepalese children, assessed using molecular serotyping

scientific article

Multiple Streptococcus pneumoniae serotypes in aural discharge samples from children with acute otitis media with spontaneous otorrhea

scientific article published on 24 July 2013

Multiple colonization with S. pneumoniae before and after introduction of the seven-valent conjugated pneumococcal polysaccharide vaccine

scientific article (publication date: 16 July 2010)

Mycobacterial cells have dual nickel-cobalt sensors: sequence relationships and metal sites of metal-responsive repressors are not congruent

scientific journal article

Mycobacterium leprae genomes from a British medieval leprosy hospital: towards understanding an ancient epidemic

scientific article

Mycobacterium tuberculosis DNA repair in response to subinhibitory concentrations of ciprofloxacin

scientific journal article

Nontypeable pneumococcal isolates among navajo and white mountain apache communities: are these really a cause of invasive disease?

scientific article

NssR, a member of the Crp-Fnr superfamily from Campylobacter jejuni, regulates a nitrosative stress-responsive regulon that includes both a single-domain and a truncated haemoglobin

scientific article

Persistent circulation of vaccine serotypes and serotype replacement after five years of UK infant immunisation with PCV13

scientific article published on 01 March 2020

Phenotypic and transcriptional characterization of the meningococcal PhoPQ system, a magnesium-sensing two-component regulatory system that controls genes involved in remodeling the meningococcal cell surface

scientific article published on July 2005

Pneumococcal Serotypes Colonise the Nasopharynx in Children at Different Densities

scientific article

Pneumococcal carriage in children in Ulaanbaatar, Mongolia before and one year after the introduction of the 13-valent pneumococcal conjugate vaccine

scientific article published on 04 June 2019

Pneumococcal carriage in vaccine-eligible children and unvaccinated infants in Lao PDR two years following the introduction of the 13-valent pneumococcal conjugate vaccine

scientific article published on 28 November 2018

Pneumococcal carriage, density, and co-colonization dynamics: A longitudinal study in Indonesian infants

scientific article published on 25 June 2019

Pneumococcal colonization in healthy adult research participants in the conjugate vaccine era, United Kingdom, 2010-2017

article

Pneumococcal sequence type replacement among American Indian children: A comparison of pre- and routine-PCV7 eras

scientific article published in March 2012

Posttranscriptional regulation of flagellin synthesis in Helicobacter pylori by the RpoN chaperone HP0958.

scientific article

Public Health Risks Associated with Heavy Metal and Microbial Contamination of Drinking Water in Australia

scientific article published on 18 October 2019

Quantification of global transcription patterns in prokaryotes using spotted microarrays

scientific article

Real-Time Continuous Surveillance of Temperature and Flow Events Presents a Novel Monitoring Approach for Hospital and Healthcare Water Distribution Systems

scientific article published on 13 April 2019

Response of Staphylococcus aureus to subinhibitory concentrations of a sequence-selective, DNA minor groove cross-linking pyrrolobenzodiazepine dimer

scientific article published on 10 September 2009

Resurgence of serotype 19F carriage in preschool children in Portugal in the context of continuing moderate conjugate pneumococcal vaccine uptake

scientific article published on 10 April 2013

Rotating wall vessel exposure alters protein secretion and global gene expression in Staphylococcus aureus

article

Separated at birth? Microarray analysis of two strikingly similar yersinia species

scientific article published on January 2002

Serotype-specific correlates of protection for pneumococcal carriage: an analysis of immunity in 19 countries

scientific article published on 21 October 2017

Stationary phase gene expression of Mycobacterium tuberculosis following a progressive nutrient depletion: a model for persistent organisms?

scientific article published on January 2004

Symmetric bis-benzimidazoles are potent anti-staphylococcal agents with dual inhibitory mechanisms against DNA gyrase

scientific article published on 12 July 2012

The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults

scientific article published on 29 July 2020

The HP0256 gene product is involved in motility and cell envelope architecture of Helicobacter pylori

scientific article

The Staphylococcus aureus response to unsaturated long chain free fatty acids: survival mechanisms and virulence implications

scientific article

The blp Locus of Streptococcus pneumoniae Plays a Limited Role in the Selection of Strains That Can Cocolonize the Human Nasopharynx

scientific article published on 17 June 2016

The distribution of mobile genetic elements (MGEs) in MRSA CC398 is associated with both host and country

scientific article

The heat shock response of Mycobacterium tuberculosis: linking gene expression, immunology and pathogenesis.

scientific article

The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis

scientific article published on January 2004

The majority of genes in the pathogenic Neisseria species are present in non-pathogenic Neisseria lactamica, including those designated as virulence genes: response

scientific article published on 30 May 2006

The majority of inducible DNA repair genes in Mycobacterium tuberculosis are induced independently of RecA

scientific article published on 01 November 2003

The minor groove-binding agent ELB-21 forms multiple interstrand and intrastrand covalent cross-links with duplex DNA and displays potent bactericidal activity against methicillin-resistant Staphylococcus aureus

scientific article

The pneumococcal response to oxidative stress includes a role for Rgg

scientific article

Transcriptional profiling of XdrA, a new regulator of spa transcription in Staphylococcus aureus

scientific article

Transcriptional signature following inhibition of early-stage cell wall biosynthesis in Staphylococcus aureus

scientific article published on 21 January 2009

Two distinct clones of methicillin-resistant Staphylococcus aureus (MRSA) with the same USA300 pulsed-field gel electrophoresis profile: a potential pitfall for identification of USA300 community-associated MRSA.

scientific article published on 16 September 2009

Use of genome level-informed PCR as a new investigational approach for analysis of outbreak-associated Mycobacterium tuberculosis isolates.

scientific article

Using a DNA microarray to investigate the distribution of insect virulence factors in strains of photorhabdus bacteria.

scientific article published on August 2003

Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates.

scientific article published on 8 March 2012

Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever

scientific article published on 17 November 2008

Whole genome analysis using microarrays

scientific article published on January 2009

Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity.

scientific article

XDR-TB transmission in London: Case management and contact tracing investigation assisted by early whole genome sequencing.

scientific article published on 13 June 2016

Paulina is supported by:

About Paulina

Help