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List of works by Nicolas Matentzoglu

A Comparative Study Of Methods For A Priori Prediction Of Mcq Difficulty

article published in the Semantic Web Journal

A Multi-reasoner, Justification-Based Approach to Reasoner Correctness

scientific article published at ISWC 2015

A Simple Standard for Ontological Mappings 2022: Updates of data model and outlook

Conference paper

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A Snapshot of the OWL Web

scientific article published at ISWC 2013

A Systematic Survey Of Temporal Requirements Of Bio-health Ontologies

article published in the Semantic Web Journal

A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling

scientific article published on 14 December 2023

Characterizing Long COVID: Deep Phenotype of a Complex Condition

scientific article published on 25 November 2021

Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the ‘wild’

Computable Declarative Representation of Clinical Assessment Scales in EHRs

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

article by Sebastian Köhler et al published 8 January 2019 in Nucleic Acids Research

Formalizing Insect Morphological Data: A Model-Based, Extensible Insect Anatomy Ontology and Its Potential Applications in Biodiversity Research and Informatics

scientific article published on 18 January 2022

Identifying the challenges of code/theory translation: report from the Code/Theory 2017 workshop

article

Inference Inspector: Improving the verification of ontology authoring actions

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

scientific article published on 01 October 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 18 August 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 9 November 2020

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023

KG-Hub—building and exchanging biological knowledge graphs

scientific article published in 2023

MIRO: guidelines for minimum information for the reporting of an ontology

scientific article published on 18 January 2018

Measuring Expert Performance at Manually Classifying Domain Entities Under Upper Ontology Classes

scientific article published on 23 October 2018

Mondo: Unifying diseases for the world, by the world

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

OWL Reasoning: Subsumption Test Hardness and Modularity

scientific article published on 08 June 2017

Ontology Development Kit

The Ontology Development Kit is a toolbox of various ontology related tools such as ROBOT and dosdp-tools, bundled as a docker image. It provides executable workflows for managing ontologies continuous integration, releases and dynamic imports.

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms

scientific article published on 28 July 2021

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery

scientific article published on 01 January 2019

Simple Standard for Sharing Ontology Mappings

Metadata standard

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

scientific article published on 21 February 2024

The Empirical Robustness of Description Logic Classification

scientific article published in proceedings of the iswc 2013 posters & demonstrations track

The Human Phenotype Ontology in 2021

scientific article published on 02 December 2020

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Manchester OWL Repository: System Description

scientific article published in proceedings of the iswc 2014 posters & demonstrations track

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The OWL Reasoner Evaluation (ORE) 2015 Competition Report

article

The OWL Reasoner Evaluation (ORE) 2015 Resources

scientific article published at ISWC 2016

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The Ontology of Biological Attributes (OBA)—computational traits for the life sciences

scientific article published in 2023

The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX)

scientific article published on 26 April 2021

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

scientific article published on 22 March 2022

Unifying the Identification of Biomedical Entities with the Bioregistry

preprint published on 10 July 2022

Unifying the identification of biomedical entities with the Bioregistry

scientific article published on 19 November 2022

Virtual Fly Brain—An interactive atlas of the Drosophila nervous system

scientific article published in 2023