List of works by Markus Pfenninger

<i>De novo</i> Genome Assembly of the Raccoon Dog (<i>Nyctereutes procyonoides</i>)

publication published on 29 April 2021

<i>De novo</i> genome assembly of the land snail <i>Candidula unifasciata</i> (Mollusca: Gastropoda)

scientific article published on 28 May 2021

A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs

scientific article published on 08 February 2022

A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera)

scientific article published on 14 February 2020

A comprehensive phylogeographic study of Arion vulgaris Moquin-Tandon, 1855 (Gastropoda: Pulmonata: Arionidae) in Europe

scientific article published on 17 December 2019

A genetic basis for intraspecific differences in developmental timing?

scientific article published on November 2011

A multigenerational approach can detect early Cd pollution in Chironomus riparius

scientific article published on 02 August 2020

A new Trochulus species from Switzerland (Gastropoda: Pulmonata: Hygromiidae)

scientific article published on 15 December 2005

A new approach to an old conundrum--DNA barcoding sheds new light on phenotypic plasticity and morphological stasis in microsnails (Gastropoda, Pulmonata, Carychiidae).

scientific article published on 10 November 2010

A reference genome of the European beech (Fagus sylvatica L.).

scientific article

A species delimitation approach in the Trochulus sericeus/hispidus complex reveals two cryptic species within a sharp contact zone

scientific article

Adaptive differentiation coincides with local bioclimatic conditions along an elevational cline in populations of a lichen-forming fungus

scientific article

Alpine crossroads or origin of genetic diversity? Comparative phylogeography of two sympatric microgastropod species

scientific article (publication date: 2012)

An annotated draft genome for Radix auricularia (Gastropoda, Mollusca)

An annotated draft genome for Radix auricularia (Gastropoda, Mollusca).

scientific article

An experimental assessment of reproductive isolation and its consequences for seasonal hybridization dynamics

scientific article published in 2018

Anatomical variation in cryptic mudsnail species: Statistical discrimination and evolutionary significance

article

Candidula conglomeratica sp. nov. from the northern Apennines, Italy (Gastropoda: Eupulmonata: Geomitridae)

scientific article

Characterizing a hybrid zone between a cryptic species pair of freshwater snails

scientific article

Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence.

scientific article

Climate-driven range dynamics of the freshwater limpet,Ancylus fluviatilis(Pulmonata, Basommatophora)

article

Combining De Novo Peptide Sequencing Algorithms, A Synergistic Approach to Boost Both Identifications and Confidence in Bottom-up Proteomics.

scientific article

Combining environmental DNA and species distribution modeling to evaluate reintroduction success of a freshwater fish

scientific article published on 02 December 2019

Comparing the efficacy of morphologic and DNA-based taxonomy in the freshwater gastropod genus Radix (Basommatophora, Pulmonata)

scientific article

Control region length dynamics potentially drives amino acid evolution in tarsier mitochondrial genomes.

scientific article

Cryptic animal species are homogeneously distributed among taxa and biogeographical regions

scientific article

DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs

scientific article

DNA barcoding of earthworms (Eisenia fetida/andrei complex) from 28 ecotoxicological test laboratories

scholarly article by Jörg Römbke et al published August 2016 in Applied Soil Ecology

Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers

scientific article

Different diversification histories in tropical and temperate lineages in the ascomycete subfamily Protoparmelioideae (Parmeliaceae)

scientific article

Direct estimation of the spontaneous mutation rate by short-term mutation accumulation lines in

Disjunct distribution of the Mediterranean freshwater crab Potamon fluviatile—natural expansion or human introduction?

Ecological and morphological differentiation among cryptic evolutionary lineages in freshwater limpets of the nominal form-group Ancylus fluviatilis (O.F. Müller, 1774).

scientific article published on October 2003

Environmental DNA Time Series in Ecology

scientific article published on 09 October 2018

Establishing laboratory cultures and performing ecological and evolutionary experiments with the emerging model species <i>Chironomus riparius</i>

scientific article published in 2019

Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora)

scientific article

Evolution of ecological traits and phylogeny of the genus Gazella

scholarly article by Hannes Lerp et al published September 2016 in Mammalian Biology

Evolution of freshwater crab diversity in the Aegean region (Crustacea: Brachyura: Potamidae).

scientific article published on 7 January 2011

Evolutionary determinants of population differences in population growth rate × habitat temperature interactions in Chironomus riparius

scientific article

Evolutionary genomics can improve prediction of species' responses to climate change

scientific article published on 14 January 2020

Experimental evidence for niche segregation in a sister species pair of non-biting midges

article

Factors and processes shaping the population structure and distribution of genetic variation across the species range of the freshwater snail radix balthica (Pulmonata, Basommatophora) ⬇️

scientific article

Genetic differentiation and selection against migrants in evolutionarily replicated extreme environments.

scientific article published on 8 May 2013

Genomic basis for drought resistance in European beech forests threatened by climate change

article by Markus Pfenninger et al published 16 June 2021 in eLife

Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges

scientific article

Genomic processes underlying rapid adaptation of a natural Chironomus riparius population to unintendedly applied experimental selection pressures

scientific article published on 05 February 2020

Global patterns of thermal tolerances and vulnerability of endotherms to climate change remain robust irrespective of varying data suitability criteria

scientific article published in May 2017

Global variation in thermal physiology of birds and mammals: evidence for phylogenetic niche conservatism only in the tropics

article

Global variation in thermal tolerances and vulnerability of endotherms to climate change

scientific article published in August 2014

Hybrid Genome Assembly of a Neotropical Mutualistic Ant

scientific article published on 01 August 2019

Impact of a flood disaster on sediment toxicity in a major river system--the Elbe flood 2002 as a case study

scientific article published on March 2005

Impact of genetic diversity and inbreeding on the life-history of Chironomus midges over consecutive generations

scientific article

Inference of a radiation in Mastus (Gastropoda, Pulmonata, Enidae) on the island of Crete

scientific article

Knowledge on exotic mosquitoes in Germany, and public acceptance and effectiveness of Bti and two self-prepared insecticides against Aedes japonicus japonicus ⬇️

scientific article published on 03 November 2020

Little parallelism in genomic signatures of local adaptation in two sympatric, cryptic sister species

scientific article published on 17 November 2020

Measuring mutagenicity in ecotoxicology: A case study of Cd exposure in Chironomus riparius

scientific article published on 08 November 2020

Methodological framework for projecting the potential loss of intraspecific genetic diversity due to global climate change

scientific article

Misperceived invasion: the Lusitanian slug (Arion lusitanicus auct. non-Mabille or Arion vulgaris Moquin-Tandon 1855) is native to Central Europe ⬇️

scientific article

Modelling seasonal dynamics, population stability, and pest control in Aedes japonicus japonicus (Diptera: Culicidae) ⬇️

article

Molecular phylogeny and character evolution in the Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora).

scientific article published in September 2004

Molecular phylogeny of Candidula (Geomitridae) land snails inferred from mitochondrial and nuclear markers reveals the polyphyly of the genus.

scientific article

Molecular phylogeny of the Ellobiidae (Gastropoda: Panpulmonata) supports independent terrestrial invasions

scientific article published on 24 December 2015

Noninvasive genetic assessment of brown bear population structure in Bulgarian mountain regions

article by Christiane Frosch et al published June 2014 in Mammalian Biology

On the use of population genomic time series for environmental monitoring

scientific article published on 07 March 2022

Oriental freshwater mussels arose in East Gondwana and arrived to Asia on the Indian Plate and Burma Terrane

scientific article published on 27 January 2022

PHYLOGEOGRAPHIC HISTORY OF THE LAND SNAIL CANDIDULA UNIFASCIATA (HELICELLINAE, STYLOMMATOPHORA): FRAGMENTATION, CORRIDOR MIGRATION, AND SECONDARY CONTACT

Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment

scientific article

Phylogenetic analyses of gazelles reveal repeated transitions of key ecological traits and provide novel insights into the origin of the genus Gazella.

scientific article published on 27 January 2016

Phylogenetic signals in thermal traits remain stronger in the tropics if we can believe published physiological data. A reply to McKechnie et al., “Data quality problems undermine analyses of endotherm upper critical temperatures”

scholarly article by Christian Hof et al published 20 August 2017 in Journal of Biogeography

Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact

scientific article published in September 2002

Phylogeography of a land snail suggests trans-Mediterranean neolithic transport

scientific article published in 2011

Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix

scientific article published on 19 August 2015

Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

scientific article

Rangewide phylogeography of a terrestrial slug in Europe: evidence for Alpine refugia and rapid colonization after the Pleistocene glaciations

scientific article

Rapid adaptation to high temperatures in

scientific article published on 03 December 2018

Rapid genetic erosion in pollutant-exposed experimental chironomid populations.

scientific article published on 10 December 2008

Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines

scientific article published on 19 January 2021

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

scientific article

Reproductive isolation and ecological niche partition among larvae of the morphologically cryptic sister species Chironomus riparius and C. piger

scientific article

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

scientific article

Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata

scientific article published in 2022

Standardized Laboratory Feeding of Larval Aedes japonicus japonicus (Diptera: Culicidae).

scientific article published on 9 October 2015

Support for the evolutionary speed hypothesis from intraspecific population genetic data in the non-biting midge Chironomus riparius

scientific article published in February 2016

Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes

Temperature dependence of spontaneous mutation rates

scientific article published in 2021

Temporal speciation pattern in the western Mediterranean genus Tudorella P. Fischer, 1885 (Gastropoda, Pomatiidae) supports the Tyrrhenian vicariance hypothesis

scientific article published on 20 September 2009

The evolutionary history of bears is characterized by gene flow across species

scientific article

The genomic footprint of climate adaptation in Chironomus riparius.

scientific article published on 23 February 2018

The impact of global climate change on genetic diversity within populations and species

scientific article

The influence of thermal tolerances on geographical ranges of endotherms

scientific article published in 2017

Thermal experiments with the Asian bush mosquito (Aedes japonicus japonicus) (Diptera: Culicidae) and implications for its distribution in Germany

scientific article published on 5 February 2018

Transcriptomic responses to predator kairomones in embryos of the aquatic snail Radix balthica

scientific article published on 17 October 2018

Twelve new microsatellite loci for the sulphur molly (Poecilia sulphuraria) and the related Atlantic molly (P. mexicana)

Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana).

scientific article published on 25 September 2015

Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphologically cryptic Chironomus (Diptera) species.

scientific article published in May 2007

Utility of island populations in re-introduction programmes--relationships between Arabian gazelles (Gazella arabica) from the Farasan Archipelago and endangered mainland populations

scientific article

When Indian crabs were not yet Asian--biogeographic evidence for Eocene proximity of India and Southeast Asia

scientific article

Why do snails have hairs? A Bayesian inference of character evolution

scientific article

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