List of works - Mehdi Mirzaei

A Proteomics Approach to Discover Drought Tolerance Proteins in Wheat Pollen Grain at Meiosis Stage

scientific article published on 30 November 2016

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

scientific article published on 4 October 2017

Alzheimer's disease pathophysiology in the Retina

scientific article published in July 2024

Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells

scientific article published on 22 February 2019

Analysis of rice proteins using SDS-PAGE shotgun proteomics

scientific article published in January 2014

BDNF Polymorphism: A Review of Its Diagnostic and Clinical Relevance in Neurodegenerative Disorders.

scientific article

Bexarotene Modulates Retinoid-X-Receptor Expression and Is Protective Against Neurotoxic Endoplasmic Reticulum Stress Response and Apoptotic Pathway Activation

scientific article published on 10 April 2018

Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools

scientific article published in 2018

Combining protein ratio p-values as a pragmatic approach to the analysis of multirun iTRAQ experiments

scientific article published on 13 January 2015

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance.

scientific article published on 5 November 2014

Complement pathway in Alzheimer's pathology and retinal neurodegenerative disorders - the road ahead

scientific article published on 01 February 2020

DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation

scientific article

Data in support of comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

scientific article

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis.

scientific article published in April 2018

Differential regulation of aquaporins, small GTPases and V‐ATPases proteins in rice leaves subjected to drought stress and recovery ⬇️

scientific article published on March 1, 2012

Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine Progenitors for Transplantation in Parkinson's Disease Animal Models

scientific article published on 29 May 2018

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women

scientific article published on 21 April 2018

Distribution and development of molecularly distinct perineuronal nets in visual thalamus

article

Evidence for local adaptation to extreme heat across populations of a widespread tree from quantitative proteomics

scientific article published in 2018

Extended exposure to sugar and/or caffeine produces distinct behavioral and neurochemical profiles in the orbitofrontal cortex of rats: Implications for neural function.

scientific article published on 2 September 2016

Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation

scientific article published on 21 February 2022

Glaucoma is associated with plasmin proteolytic activation mediated through oxidative inactivation of neuroserpin.

scientific article published on 21 August 2017

Identification of proteins from 4200-year-old skin and muscle tissue biopsies from ancient Egyptian mummies of the first intermediate period shows evidence of acute inflammation and severe immune response.

scientific article published on October 2016

Induction of virulence factors in Giardia duodenalis independent of host attachment

scientific article published on 12 February 2016

Inner blood‐retinal barrier alterations associated with vascular amyloidosis in MCI and AD patients

scientific article published in December 2022

Inner retinal injury in experimental glaucoma is prevented upon AAV mediated Shp2 silencing in a caveolin dependent manner

scientific article published on 15 April 2021

Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery

Less label, more free: approaches in label-free quantitative mass spectrometry.

scientific article published on 17 January 2011

Loss of Shp2 Rescues BDNF/TrkB Signaling and Contributes to Improved Retinal Ganglion Cell Neuroprotection

scientific article published on 04 October 2018

Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells.

scientific article published on 29 August 2017

Manipulating root water supply elicits major shifts in the shoot proteome.

scientific article

Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders

scientific article published on 17 October 2014

PTPN11 induces endoplasmic stress and apoptosis in SH-SY5Y cells.

scientific article published on 22 September 2017

Parallels between retinal and brain pathology and response to immunotherapy in old, late-stage Alzheimer's disease mouse models

scientific article published on 14 October 2020

Plant-Microbe Symbiosis: What Has Proteomics Taught Us?

scientific article published on 01 August 2019

PlantPReS: A database for plant proteome response to stress

scientific article published on 03 March 2016

PloGO: plotting gene ontology annotation and abundance in multi-condition proteomics experiments.

scientific article published on 18 January 2012

Probing the Role of the Chloroplasts in Heavy Metal Tolerance and Accumulation in Euglena gracilis

scientific article published on 14 January 2020

Prospective Isolation of ISL1+ Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy.

scientific article published on 23 February 2018

Proteome Analysis of Ground State Pluripotency.

scientific article

Proteomes of Leaf-Growing Zones in Rice Genotypes with Contrasting Drought Tolerance

scientific article published on 18 April 2019

Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (Oryza sativa)

scientific article published on 06 January 2020

Proteomic analysis of temperature stress in plants.

scientific article published on February 2010

Proteomic analysis of the dorsal and ventral hippocampus of rats maintained on a high fat and refined sugar diet.

scientific article published on 18 September 2013

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

scientific article published on 15 November 2019

Proteomics of Rice—Our Most Valuable Food Crop

Proteomics study reveals the molecular mechanisms underlying water stress tolerance induced by Piriformospora indica in barley

scientific article published on 11 October 2013

Quantitative Proteomic Analysis of the Orbital Frontal Cortex in Rats Following Extended Exposure to Caffeine Reveals Extensive Changes to Protein Expression: Implications for Neurological Disease

scientific article

Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism.

scientific article published on 09 May 2015

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia.

scientific article published on 14 February 2017

Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease

scientific article published on 16 May 2016

Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet

scientific article published in December 2015

Regulating microglial miR-155 transcriptional phenotype alleviates Alzheimer’s-induced retinal vasculopathy by limiting Clec7a/Galectin-3+ neurodegenerative microglia

scientific article published in 2022

Regulation of Brain-Derived Neurotrophic Factor and Growth Factor Signaling Pathways by Tyrosine Phosphatase Shp2 in the Retina: A Brief Review.

scientific article

Retinal arterial Aβ deposition is linked with tight junction loss and cerebral amyloid angiopathy in MCI and AD patients

scientific article published in November 2023

Retinal pathological features and proteome signatures of Alzheimer's disease

scientific article published in April 2023

Retinoid x receptor modulation protects against ER stress response and rescues glaucoma phenotypes in adult mice

scientific article published on 28 January 2019

Shotgun label-free quantitative proteomics of water-deficit-stressed midmature peanut (Arachis hypogaea L.) seed

scientific article published on 14 October 2013

Shotgun proteomic analysis of long-distance drought signaling in rice roots.

scientific article

Shotgun proteomic analysis of the Mexican lime tree infected with "CandidatusPhytoplasma aurantifolia".

scientific article published on 7 January 2013

Shotgun proteomic profiling of five species of New Zealand Pachycladon

article

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

scientific article published on 29 October 2018

TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform

2017 scientific article

The Art of validating quantitative proteomics data

scientific article published on 25 November 2018

The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia

scientific article published on 6 November 2015

The Quest for Missing Proteins in Rice

scientific article published on 11 December 2018

Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon

scientific article

Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145).

scientific article published on 28 July 2015

Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease

scientific article published on 01 February 2019

List of works by Mehdi Mirzaei

A Proteomics Approach to Discover Drought Tolerance Proteins in Wheat Pollen Grain at Meiosis Stage

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

Alzheimer's disease pathophysiology in the Retina

Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells

Analysis of rice proteins using SDS-PAGE shotgun proteomics

BDNF Polymorphism: A Review of Its Diagnostic and Clinical Relevance in Neurodegenerative Disorders.

Bexarotene Modulates Retinoid-X-Receptor Expression and Is Protective Against Neurotoxic Endoplasmic Reticulum Stress Response and Apoptotic Pathway Activation

Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools

Combining protein ratio p-values as a pragmatic approach to the analysis of multirun iTRAQ experiments

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance.

Complement pathway in Alzheimer's pathology and retinal neurodegenerative disorders - the road ahead

DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation

Data in support of comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis.

Differential regulation of aquaporins, small GTPases and V‐ATPases proteins in rice leaves subjected to drought stress and recovery ⬇️

Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine Progenitors for Transplantation in Parkinson's Disease Animal Models

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women

Distribution and development of molecularly distinct perineuronal nets in visual thalamus

Evidence for local adaptation to extreme heat across populations of a widespread tree from quantitative proteomics

Extended exposure to sugar and/or caffeine produces distinct behavioral and neurochemical profiles in the orbitofrontal cortex of rats: Implications for neural function.

Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation

Glaucoma is associated with plasmin proteolytic activation mediated through oxidative inactivation of neuroserpin.

Identification of proteins from 4200-year-old skin and muscle tissue biopsies from ancient Egyptian mummies of the first intermediate period shows evidence of acute inflammation and severe immune response.

Induction of virulence factors in Giardia duodenalis independent of host attachment

Inner blood‐retinal barrier alterations associated with vascular amyloidosis in MCI and AD patients

Inner retinal injury in experimental glaucoma is prevented upon AAV mediated Shp2 silencing in a caveolin dependent manner

Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery

Less label, more free: approaches in label-free quantitative mass spectrometry.

Loss of Shp2 Rescues BDNF/TrkB Signaling and Contributes to Improved Retinal Ganglion Cell Neuroprotection

Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells.

Manipulating root water supply elicits major shifts in the shoot proteome.

Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders

PTPN11 induces endoplasmic stress and apoptosis in SH-SY5Y cells.

Parallels between retinal and brain pathology and response to immunotherapy in old, late-stage Alzheimer's disease mouse models

Plant-Microbe Symbiosis: What Has Proteomics Taught Us?

PlantPReS: A database for plant proteome response to stress

PloGO: plotting gene ontology annotation and abundance in multi-condition proteomics experiments.

Probing the Role of the Chloroplasts in Heavy Metal Tolerance and Accumulation in Euglena gracilis

Prospective Isolation of ISL1+ Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy.

Proteome Analysis of Ground State Pluripotency.

Proteomes of Leaf-Growing Zones in Rice Genotypes with Contrasting Drought Tolerance

Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (Oryza sativa)

Proteomic analysis of temperature stress in plants.

Proteomic analysis of the dorsal and ventral hippocampus of rats maintained on a high fat and refined sugar diet.

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

Proteomics of Rice—Our Most Valuable Food Crop

Proteomics study reveals the molecular mechanisms underlying water stress tolerance induced by Piriformospora indica in barley

Quantitative Proteomic Analysis of the Orbital Frontal Cortex in Rats Following Extended Exposure to Caffeine Reveals Extensive Changes to Protein Expression: Implications for Neurological Disease

Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism.

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia.

Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease

Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet

Regulating microglial miR-155 transcriptional phenotype alleviates Alzheimer’s-induced retinal vasculopathy by limiting Clec7a/Galectin-3+ neurodegenerative microglia

Regulation of Brain-Derived Neurotrophic Factor and Growth Factor Signaling Pathways by Tyrosine Phosphatase Shp2 in the Retina: A Brief Review.

Retinal arterial Aβ deposition is linked with tight junction loss and cerebral amyloid angiopathy in MCI and AD patients

Retinal pathological features and proteome signatures of Alzheimer's disease

Retinoid x receptor modulation protects against ER stress response and rescues glaucoma phenotypes in adult mice

Shotgun label-free quantitative proteomics of water-deficit-stressed midmature peanut (Arachis hypogaea L.) seed

Shotgun proteomic analysis of long-distance drought signaling in rice roots.

Shotgun proteomic analysis of the Mexican lime tree infected with "CandidatusPhytoplasma aurantifolia".

Shotgun proteomic profiling of five species of New Zealand Pachycladon

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform

The Art of validating quantitative proteomics data

The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia

The Quest for Missing Proteins in Rice

Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon

Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145).

Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease