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List of works by Fredrik Ronquist

"Forms" of water mites (Acari: Hydrachnidia): intraspecific variation or valid species?

scientific article

A Bayesian perspective on a non-parsimonious parsimony model

scientific article published in June 2008

A Nonstationary Markov Model Detects Directional Evolution in Hymenopteran Morphology

scientific article

A fully web-illustrated morphological phylogenetic study of relationships among oak gall wasps and their closest relatives (Hymenoptera: Cynipidae) ⬇️

scientific article published on 16 June 2008

A hymenopterists’ guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions

scientific article

A maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies

scientific article published in February 2002

A mixed relaxed clock model

scientific article

A new species group in Megaselia, the lucifrons group, with description of a new species (Diptera, Phoridae)

scientific article

A new subfamily of Figitidae (Hymenoptera, Cynipoidea)

scientific article published in December 2001

A phylogenetic analysis of higher-level gall wasp relationships (Hymenoptera: Cynipidae)

scientific article published in July 1998

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

scientific article (publication date: December 2012)

An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees

scientific article published on 30 July 2015

Automated Taxonomic Identification of Insects with Expert-Level Accuracy Using Effective Feature Transfer from Convolutional Networks

scientific article published on 01 November 2019

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

scientific article

Bayesian Inference of Ancestral Host-parasite Interactions under a Phylogenetic Model of Host Repertoire Evolution

scientific article published on 19 March 2020

Bayesian analysis of amino acid substitution models

scientific article

Bayesian island biogeography in a continental setting: the Rand Flora case

scientific article (publication date: 23 October 2010)

Bayesian phylogenetic analysis of combined data

scientific article (publication date: February 2004)

Bayesian phylogenetics and its influence on insect systematics

scientific article

Closing the gap between rocks and clocks using total-evidence dating

scientific article

Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees".

scientific article published in April 2006

Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference

Completing Linnaeus's inventory of the Swedish insect fauna: Only 5,000 species left?

scientific article published on 04 March 2020

Convergent intron gains in hymenopteran elongation factor-1α ⬇️

scientific article published on February 7, 2013

DINA: Open Source and Open Services - A Modern Approach for Sustainable Natural History Collection Management Systems

scientific article published in 2017

DINA: Open Source and Open Services - A modern approach for natural history collection management systems and research

scientific article published in 2019

Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics

scientific article published in February 2008

Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches

scientific article published on 18 September 2019

Evolution of parasitism among closely related species: phylogenetic relationships and the origin of inquilinism in gall wasps (Hymenoptera, Cynipidae)

scientific article published on 01 April 1994

Evolution of the gall wasp-host plant association

scientific article published in December 2001

Evolution of the hymenopteran megaradiation

scientific article published on 22 April 2011

From Inquilines to Gall Inducers: Genomic Signature of a Life-style Transition in Synergus Gall Wasps

scientific article published on 28 September 2020

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids

scientific article published on 12 May 2006

Inferring speciation and extinction rates under different sampling schemes

scientific article published on 11 April 2011

Life history of Parnips and the evolutionary origin of gall wasps

scientific article published in 2018

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

scientific article (publication date: May 2012)

MrBayes 3: Bayesian phylogenetic inference under mixed models

scientific article

New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods

scientific article published on 16 October 2018

Optimizing insect metabarcoding using replicated mock communities

scientific article published on 13 February 2023

Phylogenetic relationships among superfamilies of Hymenoptera

scientific article (publication date: 21 July 2011)

Phylogenomic analysis of protein-coding genes resolves complex gall wasp relationships

scholarly article

Phylogeny and early evolution of the Cynipoidea (Hymenoptera)

scientific article published in October 1995

Phylogeny and historical biogeography of the cynipoid wasp family Ibaliidae (Hymenoptera)

scholarly article by Göran Nordlander et al published April 1996 in Systematic Entomology

Phylogeny of the Eucoilinae (Hymenoptera: Cynipoidea: Figitidae)

scholarly article by Félix Fontal-Cazalla et al published April 2002 in Cladistics

Phylogeny of the Hymenoptera: A cladistic reanalysis of Rasnitsyn's (1988) data

scholarly article by Fredrik Ronquist et al published January 1999 in Zoologica Scripta

Phylogeny, classification and evolution of the Cynipoidea

scientific article published in January 1999

Phylogeny, evolution and classification of gall wasps: the plot thickens

scientific article

Potential applications and pitfalls of Bayesian inference of phylogeny

scientific article

Probabilistic graphical model representation in phylogenetics

scientific article

Quasimodoana, a new Holarctic genus of eucoiline wasps (Hymenoptera, Cynipoidea, Figitidae), with a phylogenetic analysis of related genera

scholarly article by Mattias Forshage et al published 11 March 2008 in Systematic Entomology

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

scientific article

Revision of the Western Palearctic Meteorini (Hymenoptera, Braconidae), with a molecular characterization of hidden Fennoscandian species diversity ⬇️

scientific article published on 28 October 2011

Revision of the neotropical Anacharitinae genus Acanthaegilips (Hym., Cynipoidea, Figitidae)

scientific article published in 2003

Skeletal morphology of Opius dissitus and Biosteres carbonarius (Hymenoptera: Braconidae), with a discussion of terminology ⬇️

scientific article published on April 30, 2012

Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns

scientific article (publication date: April 2004)

THE CYNIPOID GENUS PARAMBLYNOTUS: REVISION, PHYLOGENY, AND HISTORICAL BIOGEOGRAPHY (HYMENOPTERA: LIOPTERIDAE)

scholarly article by Zhiwei Liu et al published 2007 in Bulletin of the American Museum of Natural History

The Swedish Malaise Trap Project: A 15 Year Retrospective on a Countrywide Insect Inventory

scientific article published on 21 January 2020

The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna

scientific article published on 23 October 2020

The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies

scientific article published on 6 March 2020

The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data

scientific article published in 2013

Total-Evidence Dating under the Fossilized Birth-Death Process

scientific article

Universal probabilistic programming offers a powerful approach to statistical phylogenetics

scientific article published on 24 February 2021

Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference

scientific article published on 27 January 2020

Xenacoelomorpha is the sister group to Nephrozoa

scientific article (publication date: 3 February 2016)

Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better

scientific article published in 2022

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