List of works - Kristel Bernaerts

A dynamic model for diauxic growth, overflow metabolism, and AI-2-mediated cell-cell communication of Salmonella Typhimurium based on systems biology concepts.

scientific article

Accurate estimation of cardinal growth temperatures of Escherichia coli from optimal dynamic experiments.

scientific article published on 11 July 2008

Amino acid uptake profiling of wild type and recombinant Streptomyces lividans TK24 batch fermentations

scientific article published on 24 August 2010

Analysis of the lag phase to exponential growth transition by incorporating inoculum characteristics

scientific article published on 16 July 2010

Antimicrobial effects of commensal oral species are regulated by environmental factors

scientific article

Application of tailor-made membranes in a multi-stage process for the purification of sweeteners from Stevia rebaudiana

Cell division theory and individual-based modeling of microbial lag: part I. The theory of cell division.

scientific article

Cell division theory and individual-based modeling of microbial lag: part II. Modeling lag phenomena induced by temperature shifts.

scientific article published in June 2005

Clinical concentrations of peroxidases cause dysbiosis in in vitro oral biofilms.

scientific article published on 8 March 2018

Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production

scientific article

Complete genome sequence of Streptomyces lividans TK24.

scientific article published on 11 February 2015

Current trends in predictive modelling of microbial lag phenomena.

scientific article

Development of antiseptic adaptation and cross-adapatation in selected oral pathogens in vitro.

scientific article

Development of predictive modelling approaches for surface temperature and associated microbiological inactivation during hot dry air decontamination.

scientific article published on 13 December 2004

Dynamics of Escherichia coli at elevated temperatures: effect of temperature history and medium.

scientific article published on 11 October 2007

Dysbiosis by neutralizing commensal mediated inhibition of pathobionts

scientific article published on 29 November 2016

Dysbiotic Biofilms Deregulate the Periodontal Inflammatory Response

scientific article published in February 2018

Erratum to: Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production.

scientific article published in January 2017

Evaluation of Sample Preparation Methods for Inter-Laboratory Metabolomics Investigation of Streptomyces lividans TK24

scientific article published on 22 September 2020

Formate hydrogen lyase mediates stationary-phase deacidification and increases survival during sugar fermentation in acetoin-producing enterobacteria.

scientific article published on 25 February 2015

Frequency of intravenous medication administration to hospitalised patients: secondary data-analysis of the Belgian nursing minimum data set.

scientific article

Genome-scale metabolic flux analysis of Streptomyces lividans growing on a complex medium.

scientific article published on 26 May 2012

Growth/no growth models describing the influence of pH, lactic and acetic acid on lactic acid bacteria developed to determine the stability of acidified sauces.

scientific article published on 14 August 2007

Impact of the inoculum composition on the structure of the total and active community and its performance in identically operated anaerobic reactors

scientific article published on 14 August 2019

Influence of pH, water activity and acetic acid concentration on Listeria monocytogenes at 7 degrees C: data collection for the development of a growth/no growth model.

scientific article

Introducing optimal experimental design in predictive modeling: a motivating example.

scientific article

Large-scale production of a thermostable Rhodothermus marinus cellulase by heterologous secretion from Streptomyces lividans

scientific article

Metabolic impact assessment for heterologous protein production in Streptomyces lividans based on genome-scale metabolic network modeling

scientific article published on 13 September 2013

Metabolomics investigation of recombinant mTNFα production in Streptomyces lividans

scientific article

Microbial safety of mayonnaise based salads: a growth/no growth model for Listeria monocytogenes as a predictive tool.

scientific article

Modelling the combined effects of structured food model system and lactic acid on Listeria innocua and Lactococcus lactis growth in mono- and coculture.

scientific article published on 13 June 2007

Modelling the influence of the inoculation level on the growth/no growth interface of Listeria monocytogenes as a function of pH, aw and acetic acid.

scientific article published on 8 August 2009

Modelling the unexpected effect of acetic and lactic acid in combination with pH and aw on the growth/no growth interface of Zygosaccharomyces bailii.

scientific article published on 4 March 2008

Modelling the work to be done by Escherichia coli to adapt to sudden temperature upshifts.

scientific article published in May 2006

Multi-objective experimental design for (13)C-based metabolic flux analysis.

scientific article published on 8 August 2015

Mussel-Inspired Architecture of High-Flux Loose Nanofiltration Membrane Functionalized with Antibacterial Reduced Graphene Oxide-Copper Nanocomposites

scientific article published on 2 August 2017

Necrotrophic growth of periodontopathogens is a novel virulence factor in oral biofilms

scientific article

Nutritional stimulation of commensal oral bacteria suppresses pathogens: the prebiotic concept

scientific article published on 27 January 2017

On the design of optimal dynamic experiments for parameter estimation of a Ratkowsky-type growth kinetics at suboptimal temperatures.

scientific article

On the influence of overexpression of phosphoenolpyruvate carboxykinase in Streptomyces lividans on growth and production of human tumour necrosis factor-alpha

scientific article published on 14 July 2012

Optimal experiment design for cardinal values estimation: guidelines for data collection.

scientific article published on 6 January 2005

Optimal fed batch experiment design for estimation of monod kinetics of Azospirillum brasilense: from theory to practice.

scientific article published on 23 August 2007

Optimal temperature input design for estimation of the square root model parameters: parameter accuracy and model validity restrictions.

scientific article

Oral prebiotics and the influence of environmental conditions in vitro

scientific article published on 25 March 2018

Protective effect of calcium on inactivation of Escherichia coli by high hydrostatic pressure.

scientific article published in October 1998

Protein Secretion in Gram-Positive Bacteria: From Multiple Pathways to Biotechnology

scientific article published on 25 November 2016

Protein secretion biotechnology in Gram-positive bacteria with special emphasis on Streptomyces lividans

scientific article

Quantifying microbial lag phenomena due to a sudden rise in temperature: a systematic macroscopic study.

scientific article published on 5 January 2005

Quantifying the heterogeneous heat response of Escherichia coli under dynamic temperatures.

scientific article published on 14 August 2009

Quantitative analysis of bacterial gene expression by using the gusA reporter gene system.

scientific article

Recombinant protein production and streptomycetes.

scientific article published on 14 July 2011

Secretome Dynamics in a Gram-Positive Bacterial Model

scientific article published on 29 November 2018

Sensitivity function-based model reduction: A bacterial gene expression case study.

scientific article published in October 2002

Simultaneous versus sequential optimal experiment design for the identification of multi-parameter microbial growth kinetics as a function of temperature.

scientific article

The influence of temperature shifts on the lag phase of Escherichia coli.

scientific article published in January 2003

Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein

scientific article published on 21 December 2018

Truncated derivatives of a multidomain thermophilic glycosyl hydrolase family 10 xylanase from Thermotoga maritima reveal structure related activity profiles and substrate hydrolysis patterns.

scientific article published on 31 October 2009

Unravelling Escherichia coli dynamics close to the maximum growth temperature through heterogeneous modelling.

scientific article published on 15 July 2009

Validation of a model for growth of Lactococcus lactis and Listeria innocua in a structured gel system: effect of monopotassium phosphate.

scientific article

List of works by Kristel Bernaerts

A dynamic model for diauxic growth, overflow metabolism, and AI-2-mediated cell-cell communication of Salmonella Typhimurium based on systems biology concepts.

Accurate estimation of cardinal growth temperatures of Escherichia coli from optimal dynamic experiments.

Amino acid uptake profiling of wild type and recombinant Streptomyces lividans TK24 batch fermentations

Analysis of the lag phase to exponential growth transition by incorporating inoculum characteristics

Antimicrobial effects of commensal oral species are regulated by environmental factors

Application of tailor-made membranes in a multi-stage process for the purification of sweeteners from Stevia rebaudiana

Cell division theory and individual-based modeling of microbial lag: part I. The theory of cell division.

Cell division theory and individual-based modeling of microbial lag: part II. Modeling lag phenomena induced by temperature shifts.

Clinical concentrations of peroxidases cause dysbiosis in in vitro oral biofilms.

Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production

Complete genome sequence of Streptomyces lividans TK24.

Current trends in predictive modelling of microbial lag phenomena.

Development of antiseptic adaptation and cross-adapatation in selected oral pathogens in vitro.

Development of predictive modelling approaches for surface temperature and associated microbiological inactivation during hot dry air decontamination.

Dynamics of Escherichia coli at elevated temperatures: effect of temperature history and medium.

Dysbiosis by neutralizing commensal mediated inhibition of pathobionts

Dysbiotic Biofilms Deregulate the Periodontal Inflammatory Response

Erratum to: Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production.

Evaluation of Sample Preparation Methods for Inter-Laboratory Metabolomics Investigation of Streptomyces lividans TK24

Formate hydrogen lyase mediates stationary-phase deacidification and increases survival during sugar fermentation in acetoin-producing enterobacteria.

Frequency of intravenous medication administration to hospitalised patients: secondary data-analysis of the Belgian nursing minimum data set.

Genome-scale metabolic flux analysis of Streptomyces lividans growing on a complex medium.

Growth/no growth models describing the influence of pH, lactic and acetic acid on lactic acid bacteria developed to determine the stability of acidified sauces.

Impact of the inoculum composition on the structure of the total and active community and its performance in identically operated anaerobic reactors

Influence of pH, water activity and acetic acid concentration on Listeria monocytogenes at 7 degrees C: data collection for the development of a growth/no growth model.

Introducing optimal experimental design in predictive modeling: a motivating example.

Large-scale production of a thermostable Rhodothermus marinus cellulase by heterologous secretion from Streptomyces lividans

Metabolic impact assessment for heterologous protein production in Streptomyces lividans based on genome-scale metabolic network modeling

Metabolomics investigation of recombinant mTNFα production in Streptomyces lividans

Microbial safety of mayonnaise based salads: a growth/no growth model for Listeria monocytogenes as a predictive tool.

Modelling the combined effects of structured food model system and lactic acid on Listeria innocua and Lactococcus lactis growth in mono- and coculture.

Modelling the influence of the inoculation level on the growth/no growth interface of Listeria monocytogenes as a function of pH, aw and acetic acid.

Modelling the unexpected effect of acetic and lactic acid in combination with pH and aw on the growth/no growth interface of Zygosaccharomyces bailii.

Modelling the work to be done by Escherichia coli to adapt to sudden temperature upshifts.

Multi-objective experimental design for (13)C-based metabolic flux analysis.

Mussel-Inspired Architecture of High-Flux Loose Nanofiltration Membrane Functionalized with Antibacterial Reduced Graphene Oxide-Copper Nanocomposites

Necrotrophic growth of periodontopathogens is a novel virulence factor in oral biofilms

Nutritional stimulation of commensal oral bacteria suppresses pathogens: the prebiotic concept

On the design of optimal dynamic experiments for parameter estimation of a Ratkowsky-type growth kinetics at suboptimal temperatures.

On the influence of overexpression of phosphoenolpyruvate carboxykinase in Streptomyces lividans on growth and production of human tumour necrosis factor-alpha

Optimal experiment design for cardinal values estimation: guidelines for data collection.

Optimal fed batch experiment design for estimation of monod kinetics of Azospirillum brasilense: from theory to practice.

Optimal temperature input design for estimation of the square root model parameters: parameter accuracy and model validity restrictions.

Oral prebiotics and the influence of environmental conditions in vitro

Protective effect of calcium on inactivation of Escherichia coli by high hydrostatic pressure.

Protein Secretion in Gram-Positive Bacteria: From Multiple Pathways to Biotechnology

Protein secretion biotechnology in Gram-positive bacteria with special emphasis on Streptomyces lividans

Quantifying microbial lag phenomena due to a sudden rise in temperature: a systematic macroscopic study.

Quantifying the heterogeneous heat response of Escherichia coli under dynamic temperatures.

Quantitative analysis of bacterial gene expression by using the gusA reporter gene system.

Recombinant protein production and streptomycetes.

Secretome Dynamics in a Gram-Positive Bacterial Model

Sensitivity function-based model reduction: A bacterial gene expression case study.

Simultaneous versus sequential optimal experiment design for the identification of multi-parameter microbial growth kinetics as a function of temperature.

The influence of temperature shifts on the lag phase of Escherichia coli.

Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein

Truncated derivatives of a multidomain thermophilic glycosyl hydrolase family 10 xylanase from Thermotoga maritima reveal structure related activity profiles and substrate hydrolysis patterns.

Unravelling Escherichia coli dynamics close to the maximum growth temperature through heterogeneous modelling.

Validation of a model for growth of Lactococcus lactis and Listeria innocua in a structured gel system: effect of monopotassium phosphate.