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List of works by Zhemin Zhou

16S-23S rDNA internal transcribed spacer regions in four Proteus species

scientific article

A Hyperthermostable Type II Pullulanase from a Deep-Sea Microorganism Pyrococcus yayanosii CH1

scientific article published on 15 August 2019

A genomic overview of the population structure of Salmonella.

scientific article

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

scientific article

A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China

scientific article

A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation ⬇️

scientific article published on January 28, 2012

A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics

scientific article published on 29 July 2020

A recalibrated molecular clock and independent origins for the cholera pandemic clones

scientific article (publication date: 2008)

Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

scientific article published on 14 October 2020

Activity Enhancement Based on the Chemical Equilibrium of Multiple-Subunit Nitrile Hydratase from Bordetella petrii.

scientific article

Aerobic denitrifying bacteria that produce low levels of nitrous oxide

scientific article

Age-dependent characterization of volatile organic compounds and age discrimination in Chinese rice wine using an untargeted GC/MS-based metabolomic approach

scientific article published on 23 April 2020

Ammonia fermentation, a novel anoxic metabolism of nitrate by fungi

scientific article published on 16 November 2001

An extracellular aminopeptidase encoded by the ywaD gene plays an important role in supplying nitrogen nutrition for the growth of Bacillus subtilis 168.

scientific article published on 3 March 2017

Biocatalytic access to β-alanine by a two-enzyme cascade synthesis

scientific article published in May 2017

Catalytic Ability Improvement of Phenylalanine Hydroxylase from Chromobacterium violaceum by N-Terminal Truncation and Proline Introduction

scientific article published on 01 September 2019

Characterization of an N-glycosylated Bacillus subtilis leucine aminopeptidase expressed in Pichia pastoris

scientific article

Characterization of cysteine sulfinic acid decarboxylase from Tribolium castaneum and its application in the production of β-alanine

scientific article published on 06 November 2019

Characterization of the promoter of the nitrate transporter-encoding gene nrtA in Aspergillus nidulans

scientific article published on 19 June 2020

Characterization of volatile organic compounds as potential aging markers in Chinese rice wine using multivariable statistics

scientific article published on 20 August 2019

Clinical, experimental, and genomic differences between intermediately pathogenic, highly pathogenic, and epidemic Streptococcus suis

scientific article published in January 2009

Cloning, expression and characterization of phenylalanine ammonia-lyase from Rhodotorula glutinis

scientific article

Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution

scientific article published on 24 February 2016

Comparative Genomics of Mycoplasma: Analysis of Conserved Essential Genes and Diversity of the Pan-Genome ⬇️

scientific article published on April 20, 2012

Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak

scientific article published on 28 February 2018

Comparative genomic analyses of Mycoplasma hyopneumoniae pathogenic 168 strain and its high-passaged attenuated strain

scientific article

Complete Genome Sequence of Aeromonas veronii Strain B565 ⬇️

scientific article published on May 6, 2011

Complete Genome Sequence of Bordetella pertussis CS, a Chinese Pertussis Vaccine Strain ⬇️

scientific article published on May 27, 2011

Complete Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus Strain ND02 ⬇️

scientific article published on April 22, 2011

Complete Genome Sequence of Lactobacillus helveticus H10 ⬇️

scientific article published on March 11, 2011

Complete Genome Sequence of Mycoplasma hyopneumoniae Strain 168 ⬇️

scientific article published on December 10, 2010

Complete Genome Sequence of Mycoplasma hyorhinis Strain HUB-1 ⬇️

scientific article published on August 27, 2010

Complete Genome Sequence of a Yersinia enterocolitica “Old World” (3/O:9) Strain and Comparison with the “New World” (1B/O:8) Strain ⬇️

scientific article published on February 16, 2011

Complete genome sequence of Enterobacter cloacae subsp. cloacae type strain ATCC 13047

scientific article

Complete genome sequence of Streptococcus thermophilus strain ND03.

scientific article

Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9.

scientific article

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia

scientific article

Complete genome sequence of the industrial strain Bacillus megaterium WSH-002

scientific article published on November 2011

Complete genome sequence of the industrial strain Ketogulonicigenium vulgare WSH-001.

scientific article

Complete genome sequence of the probiotic Lactobacillus plantarum ST-III ⬇️

scientific article published on October 29, 2010

Comprehensive characterization of a theophylline riboswitch reveals two pivotal features of Shine-Dalgarno influencing activated translation property

scientific article published on 16 December 2016

Computational Design of Nitrile Hydratase from Pseudonocardia thermophila JCM3095 for Improved Thermostability

scientific article published on 19 October 2020

Construction and development of a novel expression system of Streptomyces

scientific article published on 06 May 2015

Construction and development of an auto-regulatory gene expression system in Bacillus subtilis

scientific article

Construction of a highly active secretory expression system via an engineered dual promoter and a highly efficient signal peptide in Bacillus subtilis

scientific article published on 25 January 2016

Construction of a subunit-fusion nitrile hydratase and discovery of an innovative metal ion transfer pattern

scientific article

Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

scientific article published on 21 October 2020

Derivation of Escherichia coli O157:H7 from its O55:H7 precursor

scientific article

Design and Construction of Portable CRISPR-Cpf1-Mediated Genome Editing in Bacillus subtilis 168 Oriented Toward Multiple Utilities

scientific article published on 02 September 2020

Development of a novel strategy for robust synthetic bacterial promoters based on a stepwise evolution targeting the spacer region of the core promoter in Bacillus subtilis

scientific article published on 29 May 2019

Development of an efficient autoinducible expression system by promoter engineering in Bacillus subtilis

scientific article

Discovery of posttranslational maturation by self-subunit swapping

scholarly article

Discovery of two transglutaminases derived from same zymogen for the Streptomyces hygroscopicus and analysis of their formation processes

scientific article published on 28 January 2013

Distinct genealogies for plasmids and chromosome

scientific article published in December 2014

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

scientific article published on 16 July 2010

Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis

scientific article

Effect and mechanism analysis of different linkers on efficient catalysis of subunit-fused nitrile hydratase

scientific article

Effect of flexibility and positive charge of the C-terminal domain on the activator P14K function for nitrile hydratase in Pseudomonas putida

scientific article published on 30 January 2014

Efficient Overproduction of Active Nitrile Hydratase by Coupling Expression Induction and Enzyme Maturation via Programming a Controllable Cobalt-Responsive Gene Circuit

scientific article published on 24 March 2020

Efficient preparation of enantiopure D-phenylalanine through asymmetric resolution using immobilized phenylalanine ammonia-lyase from Rhodotorula glutinis JN-1 in a recirculating packed-bed reactor

scientific article

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

scientific article

Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri

scientific article

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020

Engineering an inducible gene expression system for Bacillus subtilis from a strong constitutive promoter and a theophylline-activated synthetic riboswitch

scientific article

Enhanced thermal stability and hydrolytic ability of Bacillus subtilis aminopeptidase by removing the thermal sensitive domain in the non-catalytic region

scientific article

Enhancement of a high efficient autoinducible expression system in Bacillus subtilis by promoter engineering

scientific article

Enhancement of thermo-stability and product tolerance of Pseudomonas putida nitrile hydratase by fusing with self-assembling peptide.

scientific article published on 31 March 2014

EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations

scientific article published in 2022

Establishment of Bioprocess for Synthesis of Nicotinamide by Recombinant Escherichia coli Expressing High-Molecular-Mass Nitrile Hydratase

scientific article

Exploitation of Bacillus subtilis as a robust workhorse for production of heterologous proteins and beyond

scientific article published on 10 September 2018

Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

scientific article published on 14 August 2015

Genome-wide Identification and Characterization of a Superfamily of Bacterial Extracellular Contractile Injection Systems

scientific article published on 01 October 2019

Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

scientific article

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature

scientific article published on 27 September 2021

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12

scientific article published on 17 April 2009

GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens

scholarly article published 9 November 2017

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

scientific article published on 26 July 2018

High-level extracellular production of recombinant nattokinase in Bacillus subtilis WB800 by multiple tandem promoters

scientific article published on 07 May 2019

Improvement of stability of nitrile hydratase via protein fragment swapping

scientific article published on 2 June 2014

Improving Pullulanase Catalysis via Reversible Immobilization on Modified Fe3O4@Polydopamine Nanoparticles

scientific article published on 9 February 2017

Improving the Thermostability and Catalytic Efficiency of the Subunit-Fused Nitrile Hydratase by Semi-Rational Engineering

scientific article published on 14 February 2018

Investigation into isomerization reaction of phenylalanine aminomutase from Pantoea agglomerans

scientific article published on 12 September 2019

Mechanism-based site-directed mutagenesis to shift the optimum pH of the phenylalanine ammonia-lyase from Rhodotorula glutinis JN-1.

scientific article

Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus

scientific article published on 05 October 2020

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

scientific article

Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica

article published in 2017

Modulating the pH Activity Profiles of Phenylalanine Ammonia Lyase from Anabaena variabilis by Modification of Center-Near Surface Residues

scientific article published on 25 March 2017

Modulation of Nitrile Hydratase Regioselectivity towards Dinitriles by Tailoring the Substrate Binding Pocket Residues

scientific article published on 6 December 2017

Multi-energy metabolic mechanisms of the fungus Fusarium oxysporum in low oxygen environments

scientific article published on 7 December 2010

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

scientific article published in 2012

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona

scientific article

One-Pot Biosynthesis of l-Aspartate from Maleate via an Engineered Strain Containing a Dual-Enzyme System

scientific article published on 17 September 2019

One-Pot Enzymatic Synthesis of D-Arylalanines Using Phenylalanine Ammonia Lyase and L-Amino Acid Deaminase

scientific article published on 08 June 2018

Over-expression, secretion, biochemical characterisation, and structure analysis of Bacillus subtilis aminopeptidase.

scientific article published on 3 April 2013

Overexpression and characterization of two types of nitrile hydratases from Rhodococcus rhodochrous J1.

scientific article

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

scientific article published on 19 July 2018

Peroxiredoxin System of Aspergillus nidulans Resists Inactivation by High Concentration of Hydrogen Peroxide-Mediated Oxidative Stress

scientific article published on 24 January 2018

Principles of Systems Biology, No. 31

scientific article published on 01 August 2018

Rates of mutation and host transmission for an Escherichia coli clone over 3 years

scientific article

Realization of Robust and Precise Regulation of Gene Expression by Multiple Sigma Recognizable Artificial Promoters

scientific article published on 19 February 2020

Recent Advances and Promises in Nitrile Hydratase: From Mechanism to Industrial Applications

scientific article published on 24 April 2020

Regulation of the catalytic behavior of pullulanases chelated onto nickel (II)-modified magnetic nanoparticles

scientific article published on 22 February 2017

Screening, identification and culture optimization of a newly isolated aromatic nitrilase-producing bacterium--Pseudomonas putida CGMCC3830.

scientific article published in March 2014

Self-subunit swapping chaperone needed for the maturation of multimeric metalloenzyme nitrile hydratase by a subunit exchange mechanism also carries out the oxidation of the metal ligand cysteine residues and insertion of cobalt

scientific article

Self-subunit swapping occurs in another gene type of cobalt nitrile hydratase

scientific article

Significance of Arg3, Arg54, and Tyr58 of L-aspartate α-decarboxylase from Corynebacterium glutamicum in the process of self-cleavage.

scientific article

Significantly enhancing recombinant alkaline amylase production in Bacillus subtilis by integration of a novel mutagenesis-screening strategy with systems-level fermentation optimization

scientific article published on 17 October 2016

Significantly improving the yield of recombinant proteins in Bacillus subtilis by a novel powerful mutagenesis tool (ARTP): Alkaline α-amylase as a case study

scientific article published on 29 June 2015

Stepwise modifications of genetic parts reinforce the secretory production of nattokinase in Bacillus subtilis

scientific article published on 08 July 2018

Strategy for successful expression of the Pseudomonas putida nitrile hydratase activator P14K in Escherichia coli

scientific article

Structure-based approach to alter the substrate specificity of Bacillus subtilis aminopeptidase

scientific article published on 31 May 2013

Successful expression of the Bordetella petrii nitrile hydratase activator P14K and the unnecessary role of Ser115

scientific article published on 20 February 2016

Surface engineering of a Pantoea agglomerans-derived phenylalanine aminomutase for the improvement of (S)-β-phenylalanine biosynthesis

scientific article published on 10 August 2019

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

scientific article published on 06 December 2019

The N-Terminal Domain of the Pullulanase from Anoxybacillus sp. WB42 Modulates Enzyme Specificity and Thermostability.

scientific article published in March 2018

The Stability Enhancement of Nitrile Hydratase from Bordetella petrii by Swapping the C-terminal Domain of β subunit.

scientific article published on 21 December 2015

The Transmission and Antibiotic Resistance Variation in a Multiple Drug Resistance Clade of Vibrio cholerae Circulating in Multiple Countries in Asia

scientific article

The Yersinia pseudotuberculosis complex: characterization and delineation of a new species, Yersinia wautersii

scientific article

The order of expression is a key factor in the production of active transglutaminase in Escherichia coli by co-expression with its pro-peptide ⬇️

scientific article published on December 23, 2011

The pro-region of Streptomyces hygroscopicus transglutaminase affects its secretion by Escherichia coli ⬇️

scientific article published on September 15, 2011

The purifying trend in the chromosomal integron in Vibrio cholerae strains during the seventh pandemic.

scientific article

The role of China in the global spread of the current cholera pandemic.

scientific article

Thermal stability improvement for phenylalanine hydroxylase by site-directed mutagenesis

scientific article published in September 2016

Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using Deep RNA sequencing

scientific article

Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever

scientific article

Unique Biogenesis of High-Molecular Mass Multimeric Metalloenzyme Nitrile Hydratase: Intermediates and a Proposed Mechanism for Self-Subunit Swapping Maturation ⬇️

scientific article published on 01 November 2010

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

scientific article

[Activation of low-molecular-mass nitrile hydratase from Rhodococcus rhodochrous J1 by heterologous activators]

scientific article published on 01 August 2020

[Construction and application of theophylline-activated RNA switches in the regulation of expression of recombinant proteins in Bacillus subtilis]

scientific article published on 01 August 2019

microRNA-133a regulates the cell cycle and proliferation of breast cancer cells by targeting epidermal growth factor receptor through the EGFR/Akt signaling pathway

scientific article published on 10 July 2013

pH-dependent activation of Streptomyces hygroscopicus transglutaminase mediated by intein

scientific article

pO157_Sal, a novel conjugative plasmid detected in outbreak isolates of Escherichia coli O157:H7.

scientific article

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