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List of works by Ilyas Yildirim

A general fragment-based approach to identify and optimize bioactive ligands targeting RNA

scientific article published on 14 December 2020

An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5′-UAA/5′-GAN Internal Loops Studied by Molecular Dynamics Methods ⬇️

scientific article published on January 1, 2010

Benchmarking AMBER Force Fields for RNA: Comparisons to NMR Spectra for Single-Stranded r(GACC) Are Improved by Revised χ Torsions ⬇️

scientific article published on July 28, 2011

Computational Investigation of RNA A-Bulges Related to the Microtubule-Associated Protein Tau Causing Frontotemporal Dementia and Parkinsonism

scientific article published on 02 January 2019

Design of a small molecule that stimulates vascular endothelial growth factor A enabled by screening RNA fold-small molecule interactions

scientific article published on 24 August 2020

Evaluating Geometric Definitions of Stacking for RNA Dinucleoside Monophosphates Using Molecular Mechanics Calculations

scientific article published on 02 June 2022

Improving Computational Predictions of Single-Stranded RNA Tetramers with Revised α/γ Torsional Parameters for the Amber Force Field.

scientific article published on 20 March 2017

Structural Features of Small Molecules Targeting the RNA Repeat Expansion That Causes Genetically Defined ALS/FTD

scientific article published on 16 November 2020

Structure and Dynamics of Electron Injection and Charge Recombination in i-Motif DNA Conjugates.

scientific article published on 17 July 2017

Structure and Dynamics of RNA Repeat Expansions That Cause Huntington's Disease and Myotonic Dystrophy Type 1.

scientific article published on 15 June 2017

Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters ⬇️

scientific article published on April 10, 2012

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