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List of works by David Van Den Berg

15q12 variants, sputum gene promoter hypermethylation, and lung cancer risk: a GWAS in smokers

scientific article

A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer

scientific article published on 30 October 2011

A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.

scientific article

A genome-wide association study of breast cancer in women of African ancestry

scientific article published on 25 August 2012

A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.

scientific article published on 15 November 2011

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

scientific article

A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry

scientific article

A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.

scientific article

A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci

scientific journal article

A new single nucleotide polymorphism in the insulin-like growth factor I regulatory region associates with colorectal cancer risk in singapore chinese.

scientific article published in January 2005

A systematic assessment of common genetic variation in CYP11A and risk of breast cancer

scientific article published in December 2006

A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer

scientific article published on 18 June 2018

Abstract 4647: 4-Aminobiphenyl hemoglobin adducts in relation to risk of bladder cancer among lifelong nonsmokers

scientific article published on 15 April 2011

Abstract LB-282: Transethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A

article

An intergenic risk locus containing an enhancer deletion in 2q35 modulates breast cancer risk by deregulating IGFBP5 expression

scientific article

Analysis of heritability and shared heritability based on genome-wide association studies for thirteen cancer types

journal article published in 2015

Antiretroviral therapy modifies the genetic effect of known type 2 diabetes-associated risk variants in HIV-infected women

scientific article

Association analysis identifies 65 new breast cancer risk loci.

scientific article published on 23 October 2017

Association between common genetic variation in Cockayne syndrome A and B genes and nucleotide excision repair capacity among smokers

scientific article published in August 2008

Association between invasive ovarian cancer susceptibility and 11 best candidate SNPs from breast cancer genome-wide association study

scientific article published on 20 March 2009

Association of the calcyon neuron-specific vesicular protein gene (CALY) with adolescent smoking initiation in China and California

scientific article

Associations of obesity and circulating insulin and glucose with breast cancer risk: a Mendelian randomization analysis

article by Xiang Shu et al published 1 October 2018 in International Journal of Epidemiology

Characteristics of triple-negative breast cancer in patients with a BRCA1 mutation: results from a population-based study of young women

scientific article published on 17 October 2011

Combined effects of MDM2 SNP309 and TP53 R72P polymorphisms, and soy isoflavones on breast cancer risk among Chinese women in Singapore ⬇️

scientific article published on July 21, 2011

Common alleles in candidate susceptibility genes associated with risk and development of epithelial ovarian cancer

scientific article

Common genetic determinants of breast-cancer risk in East Asian women: a collaborative study of 23 637 breast cancer cases and 25 579 controls

scientific article published on 27 March 2013

Common non-synonymous SNPs associated with breast cancer susceptibility: findings from the Breast Cancer Association Consortium

scientific article

Common variants at 19p13 are associated with susceptibility to ovarian cancer

scientific article

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

article

Comprehensive Characterization of Cancer Driver Genes and Mutations

article

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

scientific article published on 4 November 2015

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma

article

Comprehensive analyses of DNA repair pathways, smoking and bladder cancer risk in Los Angeles and Shanghai

scientific article

Comprehensive association testing of common genetic variation in DNA repair pathway genes in relationship with breast cancer risk in multiple populations.

scientific article published on 3 December 2007

Comprehensive evaluation of ESR2 variation and ovarian cancer risk

scientific article

Consortium analysis of 7 candidate SNPs for ovarian cancer

scientific article published on July 2008

Corrigendum: genome-wide association study of colorectal cancer identifies six new susceptibility loci

scientific article published on 26 October 2015

Dietary isothiocyanates, glutathione S-transferase polymorphisms and colorectal cancer risk in the Singapore Chinese Health Study

scientific article

Discovery of common and rare genetic risk variants for colorectal cancer

scientific article published on 03 December 2018

Dopamine genes and nicotine dependence in treatment-seeking and community smokers

scientific article published on 3 June 2009

Double-strand break damage and associated DNA repair genes predispose smokers to gene methylation

scientific article published on April 2008

ESR1/SYNE1 polymorphism and invasive epithelial ovarian cancer risk: an Ovarian Cancer Association Consortium study

scientific article

Effect of reproductive factors and oral contraceptives on breast cancer risk in BRCA1/2 mutation carriers and noncarriers: results from a population-based study

scientific article

Elevated 4-aminobiphenyl and 2,6-dimethylaniline hemoglobin adducts and increased risk of bladder cancer among lifelong nonsmokers--The Shanghai Bladder Cancer Study

scientific article

Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer

scientific article published in 2013

Erratum: Corrigendum: Common variants at 19p13 are associated with susceptibility to ovarian cancer

scholarly article published in Nature Genetics

Evaluation of unclassified variants in the breast cancer susceptibility genes BRCA1 and BRCA2 using five methods: results from a population-based study of young breast cancer patients

scientific article published on 19 February 2008

Evidence that breast cancer risk at the 2q35 locus is mediated through IGFBP5 regulation

scientific article

Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation

scientific article published on 03 September 2016

Exome-wide association study of endometrial cancer in a multiethnic population

scientific article

Exploring the cancer methylome

FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium

scientific article published on February 2014

Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome

journal article published in 2016

Fine-mapping identifies two additional breast cancer susceptibility loci at 9q31.2.

scientific article published on 4 February 2015

Fine-scale mapping of the 5q11.2 breast cancer locus reveals at least three independent risk variants regulating MAP3K1.

scientific article

Fine-scale mapping of the FGFR2 breast cancer risk locus: putative functional variants differentially bind FOXA1 and E2F1.

scientific article

Functional variants at the 11q13 risk locus for breast cancer regulate cyclin D1 expression through long-range enhancers

scientific article published on 27 March 2013

GWAS meta-analysis of 16 852 women identifies new susceptibility locus for endometrial cancer

scientific article published on 23 March 2016

Genetic determinants for promoter hypermethylation in the lungs of smokers: a candidate gene-based study

scientific article published on 2 December 2011

Genetic polymorphisms in the methylenetetrahydrofolate reductase and thymidylate synthase genes and risk of hepatocellular carcinoma

scientific article published on September 2007

Genetic polymorphisms of epidermal growth factor in relation to risk of hepatocellular carcinoma: two case-control studies

scientific article

Genetic variation in TYMS in the one-carbon transfer pathway is associated with ovarian carcinoma types in the Ovarian Cancer Association Consortium

scientific article

Genetic variation in insulin-like growth factor 2 may play a role in ovarian cancer risk

scientific article

Genetic variation in the progesterone receptor gene and risk of endometrial cancer: a haplotype-based approach

scientific article

Genetic variation in transforming growth factor beta 1 and mammographic density in Singapore Chinese women

scientific article published on 18 January 2013

Genome-Wide Testing of Exonic Variants and Breast Cancer Risk in the California Teachers Study

scientific article published on September 2017

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

scientific article published on 9 June 2011

Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer

scientific article

Genome-wide association studies identify four ER negative-specific breast cancer risk loci

scientific article published in April 2013

Genome-wide association study identifies multiple loci associated with bladder cancer risk

scientific article (publication date: March 2014)

Genome-wide association study of colorectal cancer identifies six new susceptibility loci

scientific article published on 07 July 2015

Genome-wide association study of colorectal cancer in Hispanics

scientific article published on 18 April 2016

Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.

scientific article

Genome-wide interaction study of smoking and bladder cancer risk

scientific journal article

Genome-wide testing of putative functional exonic variants in relationship with breast and prostate cancer risk in a multiethnic population

scientific article

Germ line variation at 8q24 and endometrial cancer risk

scientific article published in October 2007

Growth factor genes and change in mammographic density after stopping combined hormone therapy in the California Teachers Study

article

HSD17B1 and CYP17 polymorphisms and breast cancer risk among Chinese women in Singapore

scientific article

Haplotypes of DNMT1 and DNMT3B are associated with mutagen sensitivity induced by benzo[a]pyrene diol epoxide among smokers

scientific article

Hormone metabolism genes and mammographic density in Singapore Chinese women

scientific article

Hormone metabolism pathway genes and mammographic density change after quitting estrogen and progestin combined hormone therapy in the California Teachers Study

scientific article

Identification and characterization of novel associations in the CASP8/ALS2CR12 region on chromosome 2 with breast cancer risk

scientific article

Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer

scientific article

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

scientific article

Identification of a novel susceptibility locus at 13q34 and refinement of the 20p12.2 region as a multi-signal locus associated with bladder cancer risk in individuals of European ancestry

scientific article published on 4 January 2016

Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer

scientific article published on 23 October 2017

Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

journal article published in 2014

Isothiocyanates, glutathione S-transferase M1 and T1 polymorphisms and gastric cancer risk: a prospective study of men in Shanghai, China

scientific article published on December 2009

Large-scale evaluation of common variation in regulatory T cell-related genes and ovarian cancer outcome

scientific article published on 27 January 2014

Large-scale genotyping identifies 41 new loci associated with breast cancer risk

scientific article

Low-level processing of Illumina Infinium DNA Methylation BeadArrays ⬇️

scientific article published on March 9, 2013

Marine n-3 fatty acid intake, glutathione S-transferase polymorphisms and breast cancer risk in post-menopausal Chinese women in Singapore

scientific article published on 15 July 2004

Mendelian randomization analyses suggest a role for cholesterol in the development of endometrial cancer

scientific article published on 13 July 2020

Methodological Considerations in Estimation of Phenotype Heritability Using Genome-Wide SNP Data, Illustrated by an Analysis of the Heritability of Height in a Large Sample of African Ancestry Adults

scientific article

Native American ancestry affects the risk for gene methylation in the lungs of Hispanic smokers from New Mexico

scientific article

Nicotinic acetylcholine receptor beta2 subunit gene implicated in a systems-based candidate gene study of smoking cessation

scientific article published on July 2008

No evidence that protein truncating variants in BRIP1 are associated with breast cancer risk: implications for gene panel testing

scientific article published on 26 February 2016

Novel Common Genetic Susceptibility Loci for Colorectal Cancer

scientific article published on 01 February 2019

Ovarian cancer risk, ALDH2 polymorphism and alcohol drinking: Asian data from the Ovarian Cancer Association Consortium

scientific article published on 16 December 2017

PALB2, CHEK2 and ATM rare variants and cancer risk: data from COGS

scientific article published in December 2016

Polymorphism in the GALNT1 gene and epithelial ovarian cancer in non-Hispanic white women: the Ovarian Cancer Association Consortium

scientific article

Polymorphisms in genes involved in estrogen and progesterone metabolism and mammographic density changes in women randomized to postmenopausal hormone therapy: results from a pilot study

scientific article

Polymorphisms in the FGF2 gene and risk of serous ovarian cancer: results from the ovarian cancer association consortium

scientific article

Progesterone receptor gene polymorphisms and risk of endometriosis: results from an international collaborative effort

scientific article

Progestogen levels, progesterone receptor gene polymorphisms, and mammographic density changes: results from the Postmenopausal Estrogen/Progestin Interventions Mammographic Density Study

scientific article published in March 2012

Publisher Correction: Evidence that breast cancer risk at the 2q35 locus is mediated through IGFBP5 regulation.

scientific article published on 10 April 2018

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains

scientific article

Risk of urinary bladder cancer is associated with 8q24 variant rs9642880[T] in multiple racial/ethnic groups: results from the Los Angeles-Shanghai case-control study

scientific article

Role of inducible nitric oxide synthase in asthma risk and lung function growth during adolescence

scientific article published on 8 December 2009

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds.

scientific article

Sequence variant on 3q28 and urinary bladder cancer risk: findings from the Los Angeles-Shanghai bladder case-control study

scientific article published on 20 October 2009

Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

scientific article published on 6 March 2019

Single nucleotide polymorphisms in the TP53 region and susceptibility to invasive epithelial ovarian cancer

scientific article published on 10 March 2009

Sun exposure, vitamin D receptor gene polymorphisms, and risk of advanced prostate cancer

scientific article

Tea and circulating estrogen levels in postmenopausal Chinese women in Singapore

scientific article published on 20 January 2005

Tea intake, COMT genotype, and breast cancer in Asian-American women ⬇️

scientific article published on November 1, 2003

Testicular germ cell tumor susceptibility associated with the UCK2 locus on chromosome 1q23.

scientific article

The 19q12 bladder cancer GWAS signal: association with cyclin E function and aggressive disease

scientific article published in October 2014

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

article

The OncoArray Consortium: A Network for Understanding the Genetic Architecture of Common Cancers

scientific article published on 03 October 2016

The association of polymorphisms in hormone metabolism pathway genes, menopausal hormone therapy, and breast cancer risk: a nested case-control study in the California Teachers Study cohort

scientific article published on April 2011

The effect of cyclin D1 (CCND1) G870A-polymorphism on breast cancer risk is modified by oxidative stress among Chinese women in Singapore

scientific article published on 21 April 2005

The relationship between twenty missense ATM variants and breast cancer risk: the Multiethnic Cohort.

scientific article published in August 2003

The role of established breast cancer susceptibility loci in mammographic density in young women

scientific article published in January 2008

Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A.

scientific article

Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry.

scientific article published in August 2017

Underlying genetic structure impacts the association between CYP2B6 polymorphisms and response to efavirenz and nevirapine ⬇️

scientific article published on October 23, 2012

Urinary total isothiocyanates and colorectal cancer: a prospective study of men in Shanghai, China

scientific article published on June 2008

Variation in NF-κB signaling pathways and survival in invasive epithelial ovarian cancer

scientific article published on 16 April 2014

Variations in sex hormone metabolism genes, postmenopausal hormone therapy and risk of endometrial cancer

scientific article published on 17 August 2011

Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants

scientific article published on 14 October 2020

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