List of works by Benjamin Audit

3D chromatin conformation correlates with replication timing and is conserved in resting cells

scientific article

An Exponential Core in the Heart of the Yeast Protein Interaction Network

scientific article published on 20 October 2004

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

scientific article published on 24 July 2009

Are splicing mutations the most frequent cause of hereditary disease?

scientific article

Beyond 100 genomes

scientific article

Bifractality of human DNA strand-asymmetry profiles results from transcription

scientific article published on 12 March 2007

CORRIE: enzyme sequence annotation with confidence estimates.

scientific article

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

scientific article

CoGenT++: an extensive and extensible data environment for computational genomics

scientific article

Comparative Multifractal Analysis of Dynamic Infrared Thermograms and X-Ray Mammograms Enlightens Changes in the Environment of Malignant Tumors

scientific article published on 09 August 2016

DNA replication timing data corroborate in silico human replication origin predictions

scientific article published on 12 December 2007

Deciphering DNA replication dynamics in eukaryotic cell populations in relation with their averaged chromatin conformations.

scientific article published on 03 March 2016

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions

scientific article published on 01 November 2018

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions

Effect of genomic long-range correlations on DNA persistence length: from theory to single molecule experiments.

scientific article published in April 2010

Embryonic stem cell specific "master" replication origins at the heart of the loss of pluripotency

scientific article published on 6 February 2015

Evidence for DNA Sequence Encoding of an Accessible Nucleosomal Array across Vertebrates.

scientific article

Evidence of selection for an accessible nucleosomal array in human

scientific article

Experiments confirm the influence of genome long-range correlations on nucleosome positioning

scientific article published on 21 November 2007

Formation and positioning of nucleosomes: effect of sequence-dependent long-range correlated structural disorder

scientific article published on 14 February 2006

From DNA sequence analysis to modeling replication in the human genome

scientific article published on 23 June 2005

From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.

scientific article published in September 2003

From simple bacterial and archaeal replicons to replication N/U-domains.

scientific article published on 03 October 2013

Genome-wide mapping of individual replication fork velocities using nanopore sequencing

scientific article published on 08 June 2022

Human gene organization driven by the coordination of replication and transcription.

scientific article

Human genome replication proceeds through four chromatin states.

scientific article

Inferring where and when replication initiates from genome-wide replication timing data

scientific article published on 29 June 2012

Influence of the sequence on elastic properties of long DNA chains.

scientific article published on 11 March 2003

Large replication skew domains delimit GC-poor gene deserts in human

scientific article published on 27 August 2014

Linking the DNA strand asymmetry to the spatio-temporal replication program: II. Accounting for neighbor-dependent substitution rates

scientific article published on 27 November 2012

Long-range correlations between DNA bending sites: relation to the structure and dynamics of nucleosomes

scientific article

Modeling the percolation of annotation errors in a database of protein sequences

scientific article published on 01 December 2002

Multi-scale structural community organisation of the human genome.

scientific article

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.

scientific article published on 13 December 2012

Nucleosome positioning by genomic excluding-energy barriers

scientific article

Numerical Study of Novel Ratiometric Sensors Based on Plasmon-Exciton Coupling.

scientific article published in January 2017

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells.

scientific article

Percolation of annotation errors through hierarchically structured protein sequence databases

scientific article published on 01 February 2005

Probabilistic annotation of protein sequences based on functional classifications.

scientific article

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines

scientific article

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

scientific article

Revealing long-range interconnected hubs in human chromatin interaction data using graph theory.

scientific article published on 10 September 2013

Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains

scientific article published on 16 November 2011

SWDreader: a wavelet-based algorithm using spectral phase to characterize spike-wave morphological variation in genetic models of absence epilepsy.

scientific article

Sensitive Hg2+ Ion Detection Using Metal Enhanced Fluorescence of Novel Polyvinyl Pyrrolidone (PVP)-Templated Gold Nanoparticles

scientific article published on 16 May 2018

Spontaneous emergence of sequence-dependent rosettelike folding of chromatin fiber

scientific article published on 27 June 2008

Strain-specific genes of Helicobacter pylori: distribution, function and dynamics.

scientific article published on November 2001

Structural organization of human replication timing domains.

scientific article published on 22 April 2015

The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation.

scientific article published in June 2018

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells

scientific article

Thermodynamics of DNA loops with long-range correlated structural disorder

scientific article published on 01 August 2005

Ubiquitous human 'master' origins of replication are encoded in the DNA sequence via a local enrichment in nucleosome excluding energy barriers.

scientific article

Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences.

scientific article

Wavelet-based multifractal analysis of dynamic infrared thermograms to assist in early breast cancer diagnosis

scientific article

Paulina is supported by:

About Paulina

Help