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List of works by Yinyin Yuan

A Bayes random field approach for integrative large-scale regulatory network analysis.

scientific article published on 25 August 2008

A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenes

A sparse regulatory network of copy-number driven gene expression reveals putative breast cancer oncogenes

scientific article published on 01 July 2012

A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer

scientific article

An ecological measure of immune-cancer colocalization as a prognostic factor for breast cancer.

scientific article

Analysis of heterogeneity in T2-weighted MR images can differentiate pseudoprogression from progression in glioblastoma.

scientific article

Beyond immune density: critical role of spatial heterogeneity in estrogen receptor-negative breast cancer.

scientific article published on 27 February 2015

Biopsy variability of lymphocytic infiltration in breast cancer subtypes and the ImmunoSkew score.

scientific article published on 4 November 2016

Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci

scientific article

Classifying the evolutionary and ecological features of neoplasms

scientific article published on 15 September 2017

Computational pathology: Exploring the spatial dimension of tumor ecology

scientific article

Diffusion-weighted MRI for early detection and characterization of prostate cancer in the transgenic adenocarcinoma of the mouse prostate model.

scientific article

Directed Partial Correlation: Inferring Large-Scale Gene Regulatory Network through Induced Topology Disruptions ⬇️

scientific article published on April 6, 2011

Evaluation of CDK12 Protein Expression as a Potential Novel Biomarker for DNA Damage Response-Targeted Therapies in Breast Cancer.

scientific article published on 13 November 2017

Geospatial immune variability illuminates differential evolution of lung adenocarcinoma

scientific article published on 27 May 2020

Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions.

scientific article published on November 2015

Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer

scientific article published on 10 May 2018

Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology.

scientific article

Microenvironmental Heterogeneity Parallels Breast Cancer Progression: A Histology-Genomic Integration Analysis

scientific article

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

scientific article published in Nature Communications

Modelling the spatial heterogeneity and molecular correlates of lymphocytic infiltration in triple-negative breast cancer.

scientific article

Non-Invasive Prostate Cancer Characterization with Diffusion-Weighted MRI: Insight from In silico Studies of a Transgenic Mouse Model.

scientific article published in December 2017

Partial mixture model for tight clustering of gene expression time-course

scientific article

Patient-specific data fusion defines prognostic cancer subtypes

scientific article

Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration.

scientific article published on 9 February 2016

Predicting chemoinsensitivity in breast cancer with 'omics/digital pathology data fusion

scientific article

Quantitative histology analysis of the ovarian tumour microenvironment.

scientific article

Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling

scientific article

Relevance of Spatial Heterogeneity of Immune Infiltration for Predicting Risk of Recurrence After Endocrine Therapy of ER+ Breast Cancer.

scientific article published in February 2018

Similarity and diversity of the tumor microenvironment in multiple metastases: critical implications for overall and progression-free survival of high-grade serous ovarian cancer

scientific article published on 19 September 2016

Spatial Heterogeneity in the Tumor Microenvironment

scientific article

Stromal cell ratio based on automated image analysis as a predictor for platinum-resistant recurrent ovarian cancer

scientific article published on 18 February 2019

SuperHistopath: A Deep Learning Pipeline for Mapping Tumor Heterogeneity on Low-Resolution Whole-Slide Digital Histopathology Images

scientific article published on 01 January 2020

Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome.

scientific article published on 24 August 2014

The Spatiotemporal Evolution of Lymph Node Spread in Early Breast Cancer

scientific article published on 11 June 2018

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