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List of works by Eamonn A. Gaffney

A Mechanistic Model of the Intravitreal Pharmacokinetics of Large Molecules and the Pharmacodynamic Suppression of Ocular Vascular Endothelial Growth Factor Levels by Ranibizumab in Patients with Neovascular Age-Related Macular Degeneration.

scientific article published on 4 January 2016

A general reaction–diffusion model of acidity in cancer invasion ⬇️

scientific article published on March 28, 2013

A mass action model of a Fibroblast Growth Factor signaling pathway and its simplification.

scientific article published on 9 October 2008

A mass and solute balance model for tear volume and osmolarity in the normal and the dry eye.

scientific article published on 26 November 2009

A mathematical model of tumour and blood pHe regulation: The HCO3-/CO2 buffering system

scientific article

A method for the inference of cytokine interaction networks

scientific article published on 22 June 2022

A model of tracer transport in airway surface liquid.

scientific article published on 18 January 2007

A simulation study of sperm motility hydrodynamics near fish eggs and spheres

scientific article published on 2 November 2015

A solute gradient in the tear meniscus. I. A hypothesis to explain Marx's line.

scientific article published on April 2011

A solute gradient in the tear meniscus. II. Implications for lid margin disease, including meibomian gland dysfunction.

scientific article published on April 2011

A study of spermatozoan swimming stability near a surface.

scientific article published on 8 July 2014

Age-related changes in speed and mechanism of adult skeletal muscle stem cell migration.

scientific article published in June 2012

An in silico model of cytotoxic T-lymphocyte activation in the lymph node following short peptide vaccination

scientific article published in March 2018

An overview of multiphase cartilage mechanical modelling and its role in understanding function and pathology

scientific article

Applications of mechanistic modelling to clinical and experimental immunology: an emerging technology to accelerate immunotherapeutic discovery and development

scientific article published on 01 September 2018

Basal Tear Osmolarity as a metric to estimate body hydration and dry eye severity.

scientific article published on 21 February 2018

Bend propagation in the flagella of migrating human sperm, and its modulation by viscosity.

scientific article published on April 2009

Boundary behaviours of Leishmania mexicana: A hydrodynamic simulation study

scientific article published on 20 November 2018

CDC-42 Interactions with Par Proteins Are Critical for Proper Patterning in Polarization

scientific article published on 05 September 2020

Cartilage dysfunction in ALS patients as side effect of motion loss: 3D mechano-electrochemical computational model

scientific article

Cellular blebs: pressure-driven, axisymmetric, membrane protrusions.

scientific article published on 16 July 2013

Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment

scientific article published on 5 April 2018

Changes to both cardiac metabolism and performance accompany acute reductions in functional capillary supply ⬇️

scientific article published on 18 December 2014

Coarse-Graining the Fluid Flow around a Human Sperm.

scientific article published on 23 March 2017

Comment on the article by J. Elgeti, U. B. Kaupp, and G. Gompper: hydrodynamics of sperm cells near surfaces.

scientific article

Comparing methods for modelling spreading cell fronts.

scientific article published on 12 March 2014

Coupling fluid and solute dynamics within the ocular surface tear film: a modelling study of black line osmolarity.

scientific article published on 6 July 2012

Discrete cilia modelling with singularity distributions: application to the embryonic node and the airway surface liquid.

scientific article published on May 2007

Effect of crosslinking in cartilage-like collagen microstructures.

scientific article published on 15 October 2016

Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems.

scientific article published on 22 May 2012

Fluid flow and sperm guidance: a simulation study of hydrodynamic sperm rheotaxis

scientific article

Fock space, symbolic algebra, and analytical solutions for small stochastic systems.

scientific article published on 28 December 2015

Gene expression time delays and Turing pattern formation systems.

scientific article published in January 2006

Global contraction or local growth, bleb shape depends on more than just cell structure.

scientific article published on 29 April 2015

Glucose-lactate metabolic cooperation in cancer: insights from a spatial mathematical model and implications for targeted therapy.

scientific article published on 28 September 2014

Glyph-Based Video Visualization for Semen Analysis

scientific article published on August 2015

Heterogeneity induces spatiotemporal oscillations in reaction-diffusion systems

scientific article published on 01 May 2018

History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability.

scientific article published on 15 March 2017

Human sperm accumulation near surfaces: a simulation study

Human sperm swimming in a high viscosity mucus analogue.

scientific article published on 17 February 2018

Hydrodynamic Clustering of Human Sperm in Viscoelastic Fluids

scientific article published in Scientific Reports

Hydrodynamic analysis of flagellated bacteria swimming in corners of rectangular channels.

scientific article published on 16 December 2015

Hydrodynamic analysis of flagellated bacteria swimming near one and between two no-slip plane boundaries.

scientific article published on 20 March 2015

Incorporating spatial correlations into multispecies mean-field models.

scientific article published on 20 November 2013

Influence of stochastic domain growth on pattern nucleation for diffusive systems with internal noise.

scientific article published on 3 October 2011

Investigating a simple model of cutaneous wound healing angiogenesis.

scientific article published in October 2002

Is pigment cell pattern formation in zebrafish a game of cops and robbers?

scientific article published on 27 June 2014

Leaky vessels as a potential source of stromal acidification in tumours.

scientific article

Maternal hypoxia decreases capillary supply and increases metabolic inefficiency leading to divergence in myocardial oxygen supply and demand ⬇️

scientific article

Mathematical and computational models of the retina in health, development and disease.

scientific article published on 7 April 2016

Mathematical models of retinitis pigmentosa: The oxygen toxicity hypothesis

scientific article published on 5 May 2017

Mechanical Cell-Cell Communication in Fibrous Networks: The Importance of Network Geometry.

scientific article

Mechanical tuning of mammalian sperm behaviour by hyperactivation, rheology and substrate adhesion: a numerical exploration.

scientific article

Membrane shrinkage and cortex remodelling are predicted to work in harmony to retract blebs

scientific article

Meniscal tear film fluid dynamics near Marx's line.

scientific article published on 3 July 2013

Microbial competition in porous environments can select against rapid biofilm growth

scientific article published on 22 December 2016

Mode-doubling and tripling in reaction-diffusion patterns on growing domains: a piecewise linear model.

scientific article published in February 2002

Modeling Longitudinal Preclinical Tumor Size Data to Identify Transient Dynamics in Tumor Response to Antiangiogenic Drugs

scientific article

Modelling Aedes aegypti mosquito control via transgenic and sterile insect techniques: Endemics and emerging outbreaks ⬇️

scientific article published on April 19, 2013

Modelling Oxygen Capillary Supply to Striated Muscle Tissues ⬇️

Modelling a tethered mammalian sperm cell undergoing hyperactivation.

scientific article published on 15 June 2012

Modelling biological invasions: Individual to population scales at interfaces.

scientific article published on 13 June 2013

Modelling capillary oxygen supply capacity in mixed muscles: capillary domains revisited ⬇️

scientific article published on 24 April 2014

Modelling chemotherapy resistance in palliation and failed cure

scientific article published on 11 December 2008

Modelling mucociliary clearance.

scientific article published on 20 March 2008

Nonlinear instability in flagellar dynamics: a novel modulation mechanism in sperm migration?

scientific article

Ocular Pharmacokinetics of Therapeutic Antibodies Given by Intravitreal Injection: Estimation of Retinal Permeabilities Using a 3-Compartment Semi-Mechanistic Model

scientific article published on 20 June 2017

On the modelling of biological patterns with mechanochemical models: Insights from analysis and computation.

scientific article published in February 2010

Osmotic and electroosmotic fluid transport across the retinal pigment epithelium: A mathematical model

scientific article published on 07 August 2018

Power spectra methods for a stochastic description of diffusion on deterministically growing domains.

scientific article published on 10 August 2011

Predicted phenotypes of dry eye: proposed consequences of its natural history.

scientific article published on April 2009

Predicting the safety and efficacy of buffer therapy to raise tumour pHe: an integrative modelling study.

scientific article

Predictive Mathematical Models for the Spread and Treatment of Hyperoxia-induced Photoreceptor Degeneration in Retinitis Pigmentosa.

scientific article published in March 2018

Random blebbing motion: A simple model linking cell structural properties to migration characteristics.

scientific article published on 18 July 2017

Reaction and diffusion on growing domains: scenarios for robust pattern formation.

scientific article published in November 1999

Reply to Baveye and Darnault: Useful models are simple and extendable.

scientific article published on 24 March 2017

Retinal oxygen distribution and the role of neuroglobin

scientific article published on 14 September 2015

Speeding up the simulation of population spread models

scientific article published in 2017

Spreading speeds for plant populations in landscapes with low environmental variation

scientific article

Spreading speeds for stage structured plant populations in fragmented landscapes.

scientific article published on 30 January 2014

Squirmer dynamics near a boundary.

scientific article published on 2 December 2013

Stochastic reaction and diffusion on growing domains: understanding the breakdown of robust pattern formation.

scientific article published on 28 October 2011

Swimming efficiency of spherical squirmers: beyond the Lighthill theory.

scientific article published on 17 July 2014

The application of mathematical modelling to aspects of adjuvant chemotherapy scheduling.

scientific article published on 27 October 2003

The counterbend phenomenon in flagellar axonemes and cross-linked filament bundles.

scientific article published on 03 July 2013

The influence of gene expression time delays on Gierer-Meinhardt pattern formation systems.

scientific article published on 23 March 2010

The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation.

scientific article published on 10 November 2011

The influence of toxicity constraints in models of chemotherapeutic protocol escalation.

scientific article

The mechanics of hyperactivation in adhered human sperm

scientific article

The sensitivity of Turing self-organization to biological feedback delays: 2D models of fish pigmentation.

scientific article published in October 2013

Theoretical Insights into the Retinal Dynamics of Vascular Endothelial Growth Factor in Patients Treated with Ranibizumab, Based on an Ocular Pharmacokinetic/Pharmacodynamic Model

scientific article published on 29 May 2018

Theoretical insights into bacterial chemotaxis ⬇️

scientific article published on March 12, 2012

Three-sphere swimmer in a nonlinear viscoelastic medium.

scientific article

Tissue capillary supply--it's quality not quantity that counts!

scientific article published on 21 July 2010

Tumour angiogenesis: The gap between theory and experiments ⬇️

scientific article published on January 19, 2011

Tumour–stromal interactions in acid-mediated invasion: A mathematical model ⬇️

scientific article published on September 8, 2010

Turing Patterning in Stratified Domains

scientific article published on 15 October 2020

Turing's model for biological pattern formation and the robustness problem.

scientific article published on 08 February 2012

Vascular phenotype identification and anti-angiogenic treatment recommendation: A pseudo-multiscale mathematical model of angiogenesis.

scientific article published on 14 March 2016

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