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List of works by Jirí Macas

A Set of Cytogenetic Markers Allows the Precise Identification of All A-Genome Chromosomes in Diploid and Polyploid Wheat

scientific article

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons ⬇️

scientific article published on April 29, 2012

Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies

scientific article published on 01 June 2019

Analysis of T-DNA-mediated translational beta-glucuronidase gene fusions.

scientific article published on January 1998

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

scientific article

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

scientific article published on 11 April 2014

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

scientific article published on 20 October 2015

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

scientific article published on 13 March 2015

Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species

scientific article published on 19 September 2016

Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats

scientific article published on 03 November 2019

Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

scientific article

Chromosome analysis and sorting in Vicia sativa using flow cytometry

article

Chromosome sorting and PCR-based physical mapping in pea (Pisum sativum L.).

scientific article published on 01 January 2002

Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries

scientific article published on 05 November 2020

Complex sequence organization of heterochromatin in the holocentric plant <i>Cuscuta europaea</i> elucidated by the computational analysis of nanopore reads

scientific article published on 22 April 2021

Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

scientific article published on January 2013

Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae).

scientific article published on 19 March 2018

Development of a composite map in Vicia faba, breeding applications and future prospects.

scientific article published on 29 November 2003

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).

scientific article

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

scientific article

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

scientific article

Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes

scientific article

Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre

scientific article published on 2 September 2008

Flow cytogenetics and plant genome mapping

scientific article published in January 2004

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

scientific article published on 28 June 2019

Genome-wide analysis of repeat diversity across the family Musaceae

scientific article

Genomic repeat abundances contain phylogenetic signal.

scientific article

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

scientific article published on 23 October 2020

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

scientific article

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

scientific article

Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima

scientific article

Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced.

scientific article

Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

scientific article published on 27 June 2009

Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta

scientific article published on 14 October 2020

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

scientific article published on 25 November 2015

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

scientific article

Isolation and characterization of the highly repeated fraction of the banana genome

scientific article

Isolation of chromosomes from Pisum sativum L. hairy root cultures and their analysis by flow cytometry

article

Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences.

scientific article

Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization.

scientific article

Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain.

scientific article published on 6 October 2006

Localization of seed protein genes on flow-sorted field bean chromosomes

article

Long-range organization of plant satellite repeats investigated using strand-specific FISH.

scientific article

Mapping of repeated DNA sequences in plant chromosomes by PRINS and C-PRINS

article

Microarray-based survey of repetitive genomic sequences in Vicia spp.

scientific article

Multicolor FISH mapping of the dioecious model plant, Silene latifolia.

scientific article published on 16 January 2004

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

scientific article published on 21 April 2011

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

scientific article published on 21 June 2012

Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes

scientific article published on 27 May 2019

Nondisjunction in favor of a chromosome: the mechanism of rye B chromosome drive during pollen mitosis.

scientific article published on 26 October 2012

Organization and evolution of subtelomeric satellite repeats in the potato genome.

scientific article published on July 2011

PIGY, a new plant envelope-class LTR retrotransposon.

scientific article

Plantago lagopus B Chromosome Is Enriched in 5S rDNA-Derived Satellite DNA.

scientific article published on 13 May 2016

Primed in situ labelling facilitates flow sorting of similar sized chromosomes

scientific article published in 1995

Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).

scientific article

Repeat-sequence turnover shifts fundamentally in species with large genomes

scientific article published on 19 October 2020

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

scientific article published in February 2013

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

scientific article published on 11 September 2012

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

scientific article

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

scientific article published on 11 April 2018

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Sequence homogenization and chromosomal localization of VicTR-B satellites differ between closely related Vicia species

scientific article published on 20 June 2006

Sequence subfamilies of satellite repeats related to rDNA intergenic spacer are differentially amplified on Vicia sativa chromosomes.

scientific article

Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences

scientific article

Stretching the rules: monocentric chromosomes with multiple centromere domains

scientific article

Survey of extrachromosomal circular DNA derived from plant satellite repeats

scientific article (publication date: 22 August 2008)

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

scientific article

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

scientific article

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

article

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

scientific article published on 10 April 2017

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats

scientific article published on 20 May 2019

The agrobacterium tumefaciens C58-6b gene confers resistance to N(6)-benzyladenine without modifying cytokinin metabolism in tobacco seedlings

scientific article published on 01 October 1999

The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity

scientific article published in 2022

The giant diploid faba genome unlocks variation in a global protein crop

scientific article published in 2023

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

scientific article published on 12 December 2012

Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice

scientific article published on 20 September 2006

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