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List of works by Clare Stirzaker

A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

scientific article published on 2 April 2013

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer.

scientific article published on 7 November 2017

Advances in Prognostic Methylation Biomarkers for Prostate Cancer

scientific article published on 15 October 2020

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach

scientific article (publication date: 11 February 2014)

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

scientific article

Bisulphite Sequencing of Chromatin Immunoprecipitated DNA (BisChIP-seq).

scientific article published in January 2018

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias

scientific article published on January 2011

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.

scientific article

Comprehensive evaluation of targeted multiplex bisulphite PCR sequencing for validation of DNA methylation biomarker panels

scientific article published on 22 June 2020

Concordant epigenetic silencing of transforming growth factor-beta signaling pathway genes occurs early in breast carcinogenesis.

scientific article published on December 2007

Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity

scientific article

Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis.

scientific article published on May 2015

Copy-number-aware differential analysis of quantitative DNA sequencing data

scientific article

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.

scientific article published on 07 October 2016

Cytosines adjacent to methylated CpG sites can be partially resistant to conversion in genomic bisulfite sequencing leading to methylation artifacts.

scientific article published in November 1998

DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer.

scientific article

DNA methylation profile of triple negative breast cancer-specific genes comparing lymph node positive patients to lymph node negative patients

scientific article published on 27 September 2016

DNA methylation: Bisulphite modification and analysis

scientific article published on 01 January 2006

Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

scientific article published on November 1997

Enduring epigenetic landmarks define the cancer microenvironment

scientific article published on 12 April 2018

Epigenetic deregulation across chromosome 2q14.2 differentiates normal from prostate cancer and provides a regional panel of novel DNA methylation cancer biomarkers.

scientific article

Epigenetic inactivation of a cluster of genes flanking MLH1 in microsatellite-unstable colorectal cancer

scientific article

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band.

scientific article

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation

scientific article

Genome-wide DNA methylation profiling in triple-negative breast cancer reveals epigenetic signatures with important clinical value

scientific article published on 26 May 2015

Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells.

scientific article published in February 2002

Identification and resolution of artifacts in bisulfite sequencing.

scientific article published in June 2002

Identification of DNA methylation biomarkers with potential to predict response to neoadjuvant chemotherapy in triple-negative breast cancer

scientific article published on 18 December 2021

Loss of Special AT-Rich Binding Protein 1 Expression is a Marker of Poor Survival in Lung Cancer ⬇️

scientific article published on July 1, 2011

Methyl-CpG-binding domain proteins: readers of the epigenome

scientific article published on 30 April 2015

Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer.

scientific article published on 5 September 2016

Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.

scientific article published on 02 February 2015

Mining cancer methylomes: prospects and challenges

scientific article published on 21 December 2013

Multiplex bisulfite PCR resequencing of clinical FFPE DNA.

scientific article

Regional activation of the cancer genome by long-range epigenetic remodeling

scientific article published on 13 December 2012

Repitools: an R package for the analysis of enrichment-based epigenomic data

scientific article

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.

scientific article published on 06 April 2016

Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells.

scientific article published on June 2004

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