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List of works by Barun Mathema

A Novel Tool Improves Existing Estimates of Recent Tuberculosis Transmission in Settings of Sparse Data Collection

scientific article (publication date: 2015)

Architecture of a Species: Phylogenomics of Staphylococcus aureus

scientific article

Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

article

Carbapenem-resistant Enterobacteriaceae in the community: a scoping review

scientific article

Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding

scientific article

Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets

scientific article

Colistin- and Carbapenem-Resistant Escherichia coli Harboring mcr-1 and blaNDM-5, Causing a Complicated Urinary Tract Infection in a Patient from the United States

scientific article published on 30 August 2016

Colonization and subsequent skin and soft tissue infection due to methicillin-resistant Staphylococcus aureus in a cohort of otherwise healthy adults infected with HIV type 1.

scientific article published in July 2009

Community-acquired methicillin-resistant Staphylococcus aureus: an emerging pathogen

scientific article

Comparison of the socio-demographic and clinical features of pulmonary TB patients infected with sub-lineages within the W-Beijing and non-Beijing Mycobacterium tuberculosis

scientific article published on 23 December 2015

Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosis

scientific article published on May 2010

Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosis

scholarly article by Carolina Mehaffy et al published September 2010 in Proteomics - Clinical Applications

Differential distribution and expression of Panton-Valentine leucocidin among community-acquired methicillin-resistant Staphylococcus aureus strains

scientific article

Differential monocyte activation underlies strain-specific Mycobacterium tuberculosis pathogenesis

scientific article published on September 2004

Drivers of Tuberculosis Transmission

scientific article published in November 2017

Epidemic Klebsiella pneumoniae ST258 is a hybrid strain

scientific article

Epidemic community-associated methicillin-resistant Staphylococcus aureus: recent clonal expansion and diversification.

scientific article

Epidemiologic Correlates of Pyrazinamide-Resistant Mycobacterium tuberculosis in New York City

scientific article

Epidemiologic consequences of microvariation in Mycobacterium tuberculosis

scientific article

Evaluation of the Mtb72F polyprotein vaccine in a rabbit model of tuberculous meningitis

scientific article published on April 2006

Evolution of epidemiologic methods and concepts in selected textbooks of the 20th century

scientific article published on January 2004

Experimental tuberculosis in the Wistar rat: a model for protective immunity and control of infection

scientific article

Factors affecting tuberculosis strain success over 10 years in a high TB- and HIV-burdened community

scientific article

Genetic polymorphism in Mycobacterium tuberculosis isolates from patients with chronic multidrug-resistant tuberculosis

scientific article published on 28 May 2004

Genetic variation among Panton-Valentine leukocidin-encoding bacteriophages in Staphylococcus aureus clonal complex 30 strains

scientific article published on 2 January 2013

Genome Sequence of Bacterial Interference Strain Staphylococcus aureus 502A.

scientific article published on 10 April 2014

Genomic Epidemiology of Lineage 4 Mycobacterium tuberculosis Subpopulations in New York City and New Jersey, 1999–2009

scholarly article by Tyler Brown et al published 2016 in Open Forum Infectious Diseases

Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York City and New Jersey, 1999-2009.

scientific article

Genotype MTBDRplus for direct detection of Mycobacterium tuberculosis and drug resistance in strains from gold miners in South Africa

scientific article published on 11 January 2012

Genotypic characterisation of Mycobacterium tuberculosis isolates from tuberculous meningitis patients at a tertiary neurocare centre in Southern India

scientific article published on April 2017

Genotyping of Mycobacterium tuberculosis clinical isolates using IS6110-based restriction fragment length polymorphism analysis

scientific article published in January 2009

Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains

scientific article

Global epidemiology of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA) ⬇️

scientific article published on 05 October 2012

Global variation in bacterial strains that cause tuberculosis disease: a systematic review and meta-analysis

scholarly article by Kirsten E. Wiens et al published 30 October 2018 in BMC Medicine

High Prevalence of inhA Promoter Mutations among Patients with Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa

scientific article

Identification and Evolution of an IS6110Low‐Copy‐NumberMycobacterium tuberculosisCluster

scholarly article by Barun Mathema et al published March 2002 in Journal of Infectious Diseases

Is Panton-Valentine leukocidin the major virulence determinant in community-associated methicillin-resistant Staphylococcus aureus disease?

scientific article

Lessons from molecular epidemiology and comparative genomics

scientific article published on 22 September 2008

Molecular differentiation of historic phage-type 80/81 and contemporary epidemic Staphylococcus aureus

scientific article published on 24 October 2011

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae

scientific article

Molecular epidemiology of Mycobacterium tuberculosis among South African gold miners

scientific article

Molecular epidemiology of Mycobacterium tuberculosis in a South African community with high HIV prevalence

scientific article

Molecular epidemiology of multidrug-resistant tuberculosis, New York City, 1995-1997.

scientific article

Molecular epidemiology of tuberculosis: current insights

scientific article

Molecular genetics of para-aminosalicylic acid resistance in clinical isolates and spontaneous mutants of Mycobacterium tuberculosis

scientific article published on 23 February 2009

Multicenter Clinical and Molecular Epidemiological Analysis of Bacteremia Due to Carbapenem-Resistant Enterobacteriaceae (CRE) in the CRE Epicenter of the United States

scientific article published on 6 February 2017

Mutations in agr do not persist in natural populations of methicillin-resistant Staphylococcus aureus

scientific article

Mutations in genes for the F420 biosynthetic pathway and a nitroreductase enzyme are the primary resistance determinants in spontaneous in vitro-selected PA-824-resistant mutants of Mycobacterium tuberculosis

scientific article

Mycobacterium tuberculosis Infection among Asian Elephants in Captivity

scientific article published on March 2017

Mycobacterium tuberculosis growth at the cavity surface: a microenvironment with failed immunity

scientific article

Nasal carriage as a source of agr-defective Staphylococcus aureus bacteremia

scientific article

Nosocomial Transmission of Extensively Drug-Resistant Tuberculosis in a Rural Hospital in South Africa ⬇️

scientific article published on November 19, 2012

Persistence of a highly resistant strain of tuberculosis in New York City during 1990-1999.

scientific article published on 18 July 2003

Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda

scientific article published on 01 March 2019

Prevalence and characteristics of Staphylococcus aureus colonization among healthcare professionals in an urban teaching hospital

scientific article published on June 2010

Prevalence of multidrug-resistant pulmonary tuberculosis in counties with different duration of DOTS implementation in rural China

scientific article published in September 2008

Primary Capreomycin Resistance Is Common and Associated With Early Mortality in Patients With Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa

scientific article published in August 2015

Reduced Vancomycin Susceptibility of Methicillin-Susceptible Staphylococcus aureus Has No Significant Impact on Mortality but Results in an Increase in Complicated Infection

scientific article published on 15 May 2017

Reply to Kernodle and to Schwartzman et al

scientific article published in 2007

Reply to Yates et al.

scientific article published on 11 November 2014

Research Roadmap for Tuberculosis Transmission Science: Where Do We Go From Here and How Will We Know When We're There?

scientific article published in November 2017

Sequence analysis of the variable number tandem repeat in Staphylococcus aureus protein A gene: spa typing.

scientific article

Single Nucleotide Polymorphisms in the Mycobacterium bovis Genome Resolve Phylogenetic Relationships ⬇️

scientific article (publication date: December 2012)

Spoligologos: a bioinformatic approach to displaying and analyzing Mycobacterium tuberculosis data

scientific article

Strain families of Mycobacterium tuberculosis

scholarly article by Pablo Bifani et al published April 2002 in Trends in Microbiology

Targeted hybridization of IS6110 fingerprints identifies the W-Beijing Mycobacterium tuberculosis strains among clinical isolates

scientific article

The evolution of drug resistance in Mycobacterium tuberculosis: from a mono-rifampin-resistant cluster into increasingly multidrug-resistant variants in an HIV-seropositive population

scientific article published in July 2008

The phenolic glycolipid of Mycobacterium tuberculosis differentially modulates the early host cytokine response but does not in itself confer hypervirulence

scientific article published on 28 April 2008

Transmission of Extensively Drug-Resistant Tuberculosis in South Africa

scientific article

Transmission of tuberculosis in a South African community with a high prevalence of HIV infection

scientific article

Transmission pattern of drug-resistant tuberculosis and its implication for tuberculosis control in eastern rural China

scientific article

Virulence of selected Mycobacterium tuberculosis clinical isolates in the rabbit model of meningitis is dependent on phenolic glycolipid produced by the bacilli

scientific article

pncA Gene Mutations Associated with Pyrazinamide Resistance in Drug-Resistant Tuberculosis, South Africa and Georgia

scientific article published on March 2017

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