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List of works by Pimlapas Leekitcharoenphon

.Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium

scientific article published on 9 December 2013

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more

scientific article published on 03 December 2020

Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance

scientific article published on 25 February 2020

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

scientific article published on 29 November 2017

An Overview of Antimicrobial Resistance Profiles of Publicly Available <i>Salmonella</i> Genomes with Sufficient Quality and Metadata

scientific article published in 2023

Application of Whole-Genome Sequences and Machine Learning in Source Attribution of Salmonella Typhimurium

scientific article published on 08 June 2020

Arrangements of Mobile Genetic Elements among Virotype E Subpopulation of <i>Escherichia coli</i> Sequence Type 131 Strains with High Antimicrobial Resistance and Virulence Gene Content

scientific article published on 25 August 2021

Audouin's gull, a potential vehicle of an extended spectrum β-lactamase producing Salmonella Agona

scientific article published on 4 December 2014

Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America

scientific article

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand

scientific article

Clonal and plasmid-mediated flow of ESBL/AmpC genes in Escherichia coli in a commercial laying hen farm

scientific article published in 2022

Co-localization of carbapenem (<i>bla</i>OXA-162) and colistin (<i>mcr-1</i>) resistance genes on a transferable IncHI2 plasmid in <i>Escherichia coli</i> of chicken origin

scientific article published in 2021

Colistin Resistance Mediated by in ESBL-Producing, Multidrug Resistant Infantis in Broiler Chicken Industry, Italy (2016-2017)

article

Comparative genomics of Vibrio cholerae O1 isolated from cholera patients in Bangladesh

Comparative genomics of quinolone‐resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP)

Comparative genomics of toxigenic and non-toxigenic Staphylococcus hyicus

scientific article

Construction and application of a protein interaction map for white spot syndrome virus (WSSV).

scientific article

Corrigendum: Colistin Resistance Mediated by in ESBL-Producing, Multidrug Resistant Infantis in Broiler Chicken Industry, Italy (2016-2017)

article

Corrigendum: Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016

scientific article published on 04 December 2019

Corrigendum: Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania

scientific article published on 20 December 2019

Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution

article

Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015.

scientific article published on December 2015

Draft Genome Sequence of Acinetobacter johnsonii C6, an Environmental Isolate Engaging in Interspecific Metabolic Interactions

scientific article

Draft Genome Sequence of subsp. Serotype Typhimurium Sequence Type 313, Isolated from India

Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014.

scientific article

Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing.

scientific article published on 5 December 2017

Evaluating the usefulness of next-generation sequencing for herb authentication

scientific article published on 20 October 2021

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica

scientific article published on 04 February 2014

Expansion of a Subset Within the C2 Subclade of <i>Escherichia coli</i> Sequence Type 131 (ST131) Is Driving the Increasing Rates of Aminoglycoside Resistance

scientific article published on 08 September 2020

Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: culture-based and metagenomic approaches

scientific article published on 21 November 2020

Extremely drug-resistant Salmonella enterica serovar Senftenberg infections in patients in Zambia

scientific article published on 17 October 2012

Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe

First detection of linezolid resistance due to the optrA gene in enterococci isolated from food products in Denmark.

scientific article published on 20 May 2017

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

scientific article published on 03 March 2020

Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?

scientific article

Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017

scientific article published on 23 December 2019

Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012

scientific article

Genomic variation in Salmonella enterica core genes for epidemiological typing

scientific article

Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo

scientific article published on 15 October 2013

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104.

scientific article

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

scientific article published on 08 March 2019

Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing

scientific article published on 2 January 2018

Host Resistance, Genomics and Population Dynamics in a Enteritidis and Phage System

scholarly article by Angela Victoria Holguín et al published 22 February 2019 in Viruses

Improving hazard characterization in microbial risk assessment using next generation sequencing data and machine learning: Predicting clinical outcomes in shigatoxigenic Escherichia coli

scholarly article by Patrick Murigu Kamau Njage et al published 2 March 2019 in International Journal of Food Microbiology

IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin

scientific article published on 01 August 2019

Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections

scientific article

Investing in Food Safety for Developing Countries: Opportunities and Challenges in Applying Whole-Genome Sequencing for Food Safety Management

scientific article published on 12 June 2019

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

scientific article published on May 2016

Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next‐Generation Sequencing Data

scientific article published on 21 November 2018

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage

scientific article published on 15 January 2021

Molecular Characteristics and Zoonotic Potential of Salmonella Weltevreden From Cultured Shrimp and Tilapia in Vietnam and China

scientific article published on 25 August 2020

Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring.

scientific article published on 12 June 2018

Molecular epidemiology of Salmonella Infantis in Europe: insights into the success of the bacterial host and its parasitic pESI-like megaplasmid

scientific article published on 09 April 2020

Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes

scientific article published in February 2018

Occurrence and Characterisation of Colistin-Resistant Escherichia coli in Raw Meat in Southern Italy in 2018–2020

scientific article published in 2022

Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016

scientific article published on 08 August 2019

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

scientific article published in 2022

Phenotypic and genotypic comparison of salmonellae from diarrhoeic and healthy humans and cattle, Nigeria

scientific article

Population Genetic Structure of Listeria monocytogenes Strains as Determined by Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing

scientific article published on 27 May 2016

Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species.

scientific article

Prevalence and genomic analysis of ESBL-producing Escherichia coli in retail raw meats in Singapore

scientific article published on 17 December 2020

Quantitative Microbial Risk Assessment Based on Whole Genome Sequencing Data: Case of Listeria monocytogenes

scientific article published on 11 November 2020

Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds

scientific article published on 27 January 2015

ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin

scientific article published on 01 March 2019

Salmonella enterica serovar Typhi H58 clone has been endemic in Zimbabwe from 2012 to 2019

scientific article published on 21 December 2020

Solving the problem of comparing whole bacterial genomes across different sequencing platforms

scientific article

Surveillance and Genomics of Toxigenic O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania

article

The CGE Tool Box

The invasome of Salmonella Dublin as revealed by whole genome sequencing

scientific article published on 4 August 2017

The role of the st313-td gene in virulence of Salmonella Typhimurium ST313.

scientific article published on 03 January 2014

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

scientific article

Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792.

scientific article published on 21 July 2015

Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania

article

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data

scientific article

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