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Authors whose works are in public domain in at least one jurisdiction

List of works by Bjoern Peters

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells

scientific article

7th drug hypersensitivity meeting: part one.

scientific article

A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

scientific article published on 30 July 2019

A Protective Role for Dengue Virus-Specific CD8+ T Cells

scientific article (publication date: 15 April 2009)

A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

scientific article

A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis

scientific article published on 29 November 2018

A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

scientific article published on 16 March 2020

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

A behind the scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

scientific article published on 02 July 2020

A community resource benchmarking predictions of peptide binding to MHC-I molecules

scientific article published on 9 June 2006

A computational pipeline to generate MHC binding motifs.

scientific article

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

scientific article

A detailed analysis of the murine TAP transporter substrate specificity

scientific article

A meta-analysis of the existing knowledge of immunoreactivity against hepatitis C virus (HCV)

scientific article

A molecular view of multiple sclerosis and experimental autoimmune encephalitis: what can we learn from the epitope data?

scientific article

A multivalent and cross-protective vaccine strategy against arenaviruses associated with human disease

scientific article

A population response analysis approach to assign class II HLA-epitope restrictions

scientific article

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

scientific article

A roadmap for the immunomics of category A-C pathogens

scientific article

A strategy to determine HLA class II restriction broadly covering the DR, DP, and DQ allelic variants most commonly expressed in the general population

scientific article published on 8 February 2013

A structured model for immune exposures

scientific article published on 01 January 2020

A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis

scientific article published on 23 August 2019

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

scientific article

Ab and T cell epitopes of influenza A virus, knowledge and opportunities

scholarly article

Abacavir-reactive memory T cells are present in drug naïve individuals

scientific article

Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity

scientific article

Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data

scientific article published in November 2017

Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma

scientific article published on 13 February 2018

Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells

scientific article published on 12 May 2017

Allergy-associated T cell epitope repertoires are surprisingly diverse and include non-IgE reactive antigens

scientific article

An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry

scientific article published on 9 January 2017

An analysis of the epitope knowledge related to Mycobacteria

scientific article

An automated benchmarking platform for MHC class II binding prediction methods

scientific article

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

scientific article

An ontology for major histocompatibility restriction

scientific article

Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow's Milk-Containing Food Extracts

scientific article published on 02 July 2019

Analysis of Human RSV Immunity at the Molecular Level: Learning from the Past and Present

scientific article

Analysis of T cell responses to the major allergens from German cockroach: epitope specificity and relationship to IgE production

scientific article

Analysis of epitope information related to Bacillus anthracis and Clostridium botulinum

scientific article published in February 2008

Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes

scientific article published on 26 February 2019

Antibody specific epitope prediction-emergence of a new paradigm

scientific article published on 31 March 2015

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity

scientific article published on 16 September 2020

Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource ⬇️

scientific article published on October 31, 2010

Association between specific timothy grass antigens and changes in TH1- and TH2-cell responses following specific immunotherapy

scientific article

Automated benchmarking of peptide-MHC class I binding predictions

scientific article published on 25 February 2015

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications

scientific article published on 3 May 2005

Automatic Generation of Validated Specific Epitope Sets

scientific article

Automating document classification for the Immune Epitope Database

scientific article

Bcl6 expressing follicular helper CD4 T cells are fate committed early and have the capacity to form memory

scientific article

Benchmark datasets of immune receptor-epitope structural complexes

scientific article published on 10 October 2019

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system

scientific article published on 26 May 2020

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

scientific article published on 2 May 2017

Better living through ontologies at the Immune Epitope Database

scientific article

Broadly reactive human CD8 T cells that recognize an epitope conserved between VZV, HSV and EBV.

scientific article

CD4 T cells specific for a latency-associated γ-herpesvirus epitope are polyfunctional and cytotoxic

scientific article published on 5 November 2014

CD4+ T cells are not required for the induction of dengue virus-specific CD8+ T cell or antibody responses but contribute to protection after vaccination

scientific article

CD8 T-cell reactivity to islet antigens is unique to type 1 while CD4 T-cell reactivity exists in both type 1 and type 2 diabetes

scientific article published on 30 December 2013

CLO: The cell line ontology

scientific article

Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions

scientific article published on 25 February 2020

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

scientific article

Cardiac MRI in patients with complex CHD following primary or secondary implantation of MRI-conditional pacemaker system

scientific article published on 23 February 2015

Characterization and epitope identification of the T cell response in non-allergic individuals exposed to mouse allergen

Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses

Characterization of murine antibody responses to vaccinia virus envelope protein A14 reveals an immunodominant antigen lacking of effective neutralization targets

scientific article published on 17 March 2018

Characterization of the peptide-binding specificity of the chimpanzee class I alleles A 0301 and A 0401 using a combinatorial peptide library

scientific article

Circulating T cell-monocyte complexes are markers of immune perturbations.

scientific article

Citrullination only infrequently impacts peptide binding to HLA class II MHC

scientific article

Classification of the Universe of Immune Epitope Literature: Representation and Knowledge Gaps

scientific article

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5.

scientific article published on 16 October 2020

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

scientific article published on 09 December 2020

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

scientific article

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells

scientific article published on 11 April 2013

Coronary flow reserve measurement detects transplant coronary artery disease in pediatric heart transplant patients

scientific article published in May 2008

Correction: Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals

scientific article published on 22 July 2020

Correction: Vaccine Strain-Specificity of Protective HLA-Restricted Class 1 P. falciparum Epitopes

scientific article published on 20 December 2016

Correlates of protection efficacy induced by vaccinia virus-specific CD8+ T-cell epitopes in the murine intranasal challenge model

scientific article published on March 2009

Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation

scientific article

Coverage of related pathogenic species by multivalent and cross-protective vaccine design: arenaviruses as a model system

scientific article

Covered Cheatham-platinum stents for aortic coarctation: early and intermediate-term results

scientific article

Curation of complex, context-dependent immunological data

scientific article

Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus-Specific CD8 T Cells

article

Cutting edge: murine cytomegalovirus induces a polyfunctional CD4 T cell response

scientific article published on May 2008

Cytomegalovirus-Specific CD4 T Cells Are Cytolytic and Mediate Vaccine Protection

scientific article

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data

scientific article published on 17 April 2018

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

scientific article

Deciphering the MHC-associated peptidome: a review of naturally processed ligand data

scientific article

Defining the herpes simplex virus-specific CD8+ T cell repertoire in C57BL/6 mice

scientific article published on 25 February 2011

Definition of a pool of epitopes that recapitulates the T cell reactivity against major house dust mite allergens

scientific article published on 5 February 2015

Definition of epitopes and antigens recognized by vaccinia specific immune responses: their conservation in variola virus sequences, and use as a model system to study complex pathogens

scientific article

Dengue Virus Evolution under a Host-Targeted Antiviral

scientific article published on 11 March 2015

Dengue virus infection elicits highly polarized CX3CR1+ cytotoxic CD4+ T cells associated with protective immunity

scientific article published on 20 July 2015

Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles

scientific article published on 18 March 2019

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

scientific article

Design and utilization of epitope-based databases and predictive tools

scientific article

Detailed characterization of the peptide binding specificity of five common Patr class I MHC molecules

scientific article published on 22 June 2006

Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands

Development and Validation of a Bordetella pertussis Whole-Genome Screening Strategy

scientific article published on 02 April 2020

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes

scientific article published on 7 April 2015

Development and validation of a sample sparing strategy for HLA typing utilizing next generation sequencing

scientific article published on 28 May 2015

Development of a novel clustering tool for linear peptide sequences

scholarly article by Sandeep Kumar Dhanda et al published 6 August 2018 in Immunology

Development of a strategy and computational application to select candidate protein analogues with reduced HLA binding and immunogenicity

scientific article

Different Bla-g T cell antigens dominate responses in asthma versus rhinitis subjects

scientific article

Differential Recognition of Mycobacterium tuberculosis-Specific Epitopes as a Function of Tuberculosis Disease History

scientific article

Dissecting mechanisms of immunodominance to the common tuberculosis antigens ESAT-6, CFP10, Rv2031c (hspX), Rv2654c (TB7.7), and Rv1038c (EsxJ)

scientific article

Dissociation between epitope hierarchy and immunoprevalence in CD8 responses to vaccinia virus western reserve

scientific article published on June 2008

Distinct modulation of allergic T cell responses by subcutaneous vs. sublingual allergen-specific immunotherapy

scientific article published on 5 October 2015

Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells

scientific article published on 13 January 2014

Divergent Motifs but Overlapping Binding Repertoires of Six HLA-DQ Molecules Frequently Expressed in the Worldwide Human Population ⬇️

scientific article published on October 1, 2010

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

scientific article

Early and mid-term results with the Growth Stent--a possible concept for transcatheter treatment of aortic coarctation from infancy to adulthood by stent implantation?

scientific article published in January 2008

ElliPro: a new structure-based tool for the prediction of antibody epitopes

scientific article

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility

scientific article

Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database

scientific article published on 20 November 2018

Epitope-specific airway-resident CD4+ T cell dynamics during experimental human RSV infection

scientific article published on 01 January 2020

Erratum for Verma et al., "Cytomegalovirus-Specific CD4 T Cells Are Cytolytic and Mediate Vaccine Protection".

scientific article published on 10 August 2017

Erratum: RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection

scientific article published on 9 March 2016

Erratum: T cells from patients with Parkinson's disease recognize α-synuclein peptides

scientific article published in September 2017

Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource

scientific article

Ex vivo tetramer staining and cell surface phenotyping for early activation markers CD38 and HLA-DR to enumerate and characterize malaria antigen-specific CD8+ T-cells induced in human volunteers immunized with a Plasmodium falciparum adenovirus-vec

scientific article published on 29 October 2013

Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

scientific article

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability

scientific article published on 19 February 2018

Feasibility and efficacy of stent redilatation in aortic coarctation

scientific article published in October 2008

Feasibility of customised unipolar conversion using bipolar temporary pacing wires in patients after surgical repair of congenital heart disease

scientific article published on 20 August 2013

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

scientific article published on 3 January 2024

Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

scientific article

Footprints of antigen processing boost MHC class II natural ligand binding predictions

Footprints of antigen processing boost MHC class II natural ligand predictions

scholarly article by Carolina M Barra published in November 2018

Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1*02601 and Mamu-B*08301 reveals HLA-A2 and HLA-A3 supertypic specificities

scientific article

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes

scientific article published on 9 February 2011

GOnet: a tool for interactive Gene Ontology analysis

article

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

scientific article

Global Assessment of Dengue Virus-Specific CD4+ T Cell Responses in Dengue-Endemic Areas

scientific article published on 13 October 2017

HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

scientific article

HLA class I supertypes: a revised and updated classification

scientific article

HLA class I-drug-T-cell receptor interactions in SJS/TEN.

scientific article

HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation

scientific article

HLA-A*0201, HLA-A*1101, and HLA-B*0702 transgenic mice recognize numerous poxvirus determinants from a wide variety of viral gene products

scientific article published in October 2005

HLA-DR Marks Recently Divided Antigen-Specific Effector CD4 T Cells in Active Tuberculosis Patients

publication published on 30 June 2021

HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4+ T-Cell Responses

scientific article published on 20 July 2016

Hematopoietic cell types: prototype for a revised cell ontology

scientific article

Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis

scholarly article by Julie G Burel et al published 19 February 2019 in Frontiers in Immunology

Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology

scientific article published on 17 April 2024

Human CD4+ T cell responses to an attenuated tetravalent dengue vaccine parallel those induced by natural infection, in magnitude, HLA restriction and antigen specificity

scientific article (publication date: 14 December 2016)

Human CD8+ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets

scientific article

Human CD8⁺ and CD4⁺ T cell memory to lymphocytic choriomeningitis virus infection

scientific article published on 7 September 2011

IEDB-3D: structural data within the immune epitope database

scientific article

IEDB-AR: immune epitope database-analysis resource in 2019

scientific article published on 01 July 2019

IL-10-producing intestinal macrophages prevent excessive antibacterial innate immunity by limiting IL-23 synthesis

scientific article published on 11 May 2015

IMMUNOCAT-a data management system for epitope mapping studies

scientific article (publication date: 2010)

Identification and localization of minimal MHC-restricted CD8+ T cell epitopes within the Plasmodium falciparum AMA1 protein

scientific article

Identification of CD4+ T cell epitopes in C. burnetii antigens targeted by antibody responses

scientific article

Identification of Plasmodium falciparum circumsporozoite protein-specific CD8+ T cell epitopes in a malaria exposed population

scientific article published on 10 February 2020

Identification of errors in the IEDB using ontologies

scientific article published on 22 February 2018

Identification of minimal human MHC-restricted CD8+ T-cell epitopes within the Plasmodium falciparum circumsporozoite protein (CSP)

scientific article published in 2013

Identification of protective Lassa virus epitopes that are restricted by HLA-A2.

scientific article

Identifying Candidate Targets of Immune Responses in Zika Virus Based on Homology to Epitopes in Other Flavivirus Species

scientific article (publication date: 15 November 2016)

Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data

scientific article published on 08 November 2019

Immune Epitope Database and Analysis Resource

Immune Responses in Acute and Convalescent Patients with Mild, Moderate and Severe Disease during the 2009 Influenza Pandemic in Norway.

scientific article

Immune epitope database analysis resource

scientific article

Immune epitope database analysis resource (IEDB-AR).

scientific article published on 31 May 2008

Immune epitope mapping in the post-genomic era: lessons for vaccine development

scientific article published on 17 November 2006

Immunodominance changes as a function of the infecting dengue virus serotype and primary versus secondary infection

scientific article

Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts.

scientific article published in December 2016

Immunodominant Dengue Virus-Specific CD8+ T Cell Responses Are Associated with a Memory PD-1+ Phenotype

scientific article

Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes

scientific article

Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection

scientific article published on 06 January 2021

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins

scientific article published on 01 November 2018

Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity

scientific article published on 29 September 2016

Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells

scientific article published on 22 June 2020

Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression

scientific article published on 15 November 2018

Implantation of a fully subcutaneous ICD in a patient with single ventricle morphology and Eisenmenger physiology

scientific article published in August 2012

Improved methods for predicting peptide binding affinity to MHC class II molecules

scientific article published on 6 January 2018

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

scientific article published on 18 April 2020

In vitro induction of neoantigen-specific T cells in myelodysplastic syndrome, a disease with low mutational burden

scientific article published on 28 November 2020

In vivo RNA interference screens identify regulators of antiviral CD4(+) and CD8(+) T cell differentiation

scientific article

Insights into HLA-restricted T cell responses in a novel mouse model of dengue virus infection point toward new implications for vaccine design

scientific article

Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality

scientific article published in May 2024

Integrating epitope data into the emerging web of biomedical knowledge resources

scientific article

Investigation of Outbreak-Specific Nonsynonymous Mutations on Ebolavirus GP in the Context of Known Immune Reactivity

scholarly article by Kerrie Vaughan et al published 2018 in Journal of Immunology Research

Is mapping the BCG vaccine-induced immune responses the key to improving the efficacy against tuberculosis?

scientific article published on 19 November 2020

Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

scholarly article

Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with the allergen-specific modulation of immune reactivity

scientific article published on 14 December 2015

Lack of evidence for BCG vaccine protection from severe COVID-19

scientific article published on 29 September 2020

Lack of evidence supporting a role of IFN-β and TGF-β in differential polarization of Bordetella pertussis specific-T cell responses

scientific article published on 28 September 2020

Limitations of Ab initio predictions of peptide binding to MHC class II molecules

scientific article

Linear Epitopes in Vaccinia Virus A27 Are Targets of Protective Antibodies Induced by Vaccination against Smallpox

scientific article published on 17 February 2016

Lymphocytic choriomeningitis virus infection yields overlapping CD4+ and CD8+ T-cell responses

scientific article published on October 2008

Machine learning reveals a non-canonical mode of peptide binding to MHC class II molecules.

scientific article published on 24 May 2017

Major Histocompatibility Complex Binding, Eluted Ligands, and Immunogenicity: Benchmark Testing and Predictions

scientific article published on 01 January 2019

Measurement of ex vivo ELISpot interferon-gamma recall responses to Plasmodium falciparum AMA1 and CSP in Ghanaian adults with natural exposure to malaria

scientific article published on February 2016

Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset

scientific article

Meta-analysis of all immune epitope data in the Flavivirus genus: inventory of current immune epitope data status in the context of virus immunity and immunopathology

scientific article

Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes

scientific article

Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).

scientific article published in June 2018

Minimal Information about MHC Multimers (MIAMM)

scientific article published on 18 January 2022

Modeling biomedical experimental processes with OBI

scientific article

Molecular Signatures of Dengue Virus-Specific IL-10/IFN-γ Co-producing CD4 T Cells and Their Association with Dengue Disease

scientific article published on 01 December 2019

Molecular determinants of T cell epitope recognition to the common Timothy grass allergen

scientific article published on 16 June 2010

Most viral peptides displayed by class I MHC on infected cells are immunogenic

scientific article

Mrp1 is involved in lipid presentation and iNKT cell activation by Streptococcus pneumoniae

scientific article published in Nature Communications

Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients

scientific article published on 20 June 2023

Murine anti-vaccinia virus D8 antibodies target different epitopes and differ in their ability to block D8 binding to CS-E

scientific article

Naive precursor frequencies and MHC binding rather than the degree of epitope diversity shape CD8+ T cell immunodominance

scientific article published in August 2008

Navigating diabetes-related immune epitope data: resources and tools provided by the Immune Epitope Database (IEDB)

scientific article

NetMHCpan, a method for MHC class I binding prediction beyond humans

scientific article published on 12 November 2008

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

scientific article

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

scientific article published on 4 October 2017

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

scientific article published on 14 May 2020

New strategies for allergen T cell epitope identification: going beyond IgE

scientific article

Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis

scientific article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

Of mice and humans: how good are HLA transgenic mice as a model of human immune responses?

scientific article

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

Overcoming the Ontology Enrichment Bottleneck with Quick Term Templates

PEASE: predicting B-cell epitopes utilizing antibody sequence

scientific article published on 27 November 2014

Pathogenic Autoimmunity in Atherosclerosis Evolves from Initially Protective ApoB-Reactive CD4+ T-Regulatory Cells

scientific article published on 24 July 2020

Patterns of cellular immunity associated with experimental infection with rDEN2Δ30 (Tonga/74) supports its suitability as a human DENV challenge strain

scientific article (publication date: February 2017)

Peanut-specific T cell responses in patients with different clinical reactivity

scientific article published in PLoS ONE

Peptide binding predictions for HLA DR, DP and DQ molecules

scientific article

Peptide-binding motifs of two common equine class I MHC molecules in Thoroughbred horses

scientific article

Polyfunctional CD4+ T cell responses to a set of pathogenic arenaviruses provide broad population coverage

scientific article

Polyfunctional CD4+ T cell responses to immunodominant epitopes correlate with disease activity of virulent Salmonella

scientific article

Positional bias of MHC class I restricted T-cell epitopes in viral antigens is likely due to a bias in conservation

scientific article

Potent Neutralization of Vaccinia Virus by Divergent Murine Antibodies Targeting a Common Site of Vulnerability in L1 Protein

scientific article

Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population

scientific article

Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis

scientific article published in January 2018

Predicting HLA CD4 Immunogenicity in Human Populations

scientific article

Predicting T cell recognition of MHC class I restricted neoepitopes

scientific article published on 27 August 2018

Predicting cell types and genetic variations contributing to disease by combining GWAS and epigenetic data

scientific article published in 2013

Preliminary experience with a new 18 mm Amplatzer PFO occluder for small persistent foramen ovale

scientific article published in August 2003

Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals

scientific article published on 11 February 2013

Prior Dengue virus exposure shapes T cell immunity to Zika virus in humans

scientific article published on 4 October 2017

Pro-apoptotic Bax molecules densely populate the edges of membrane pores

scientific article

Properties of MHC class I presented peptides that enhance immunogenicity

scientific article

Quantifying the contribution of defective ribosomal products to antigen production: a model-based computational analysis

scientific article

Quantitating T cell cross-reactivity for unrelated peptide antigens

scientific article (publication date: October 2009)

Quantitative and Qualitative Perturbations of CD8+ MAITs in Healthy Mycobacterium tuberculosis-Infected Individuals

scientific article published on 04 June 2020

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

scientific article

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

scientific article

Query enhancement through the practical application of ontology: the IEDB and OBI.

scientific article published on 15 April 2013

RSV-specific airway resident memory CD8+ T cells and differential disease severity after experimental human infection

scientific article

Rare case of pulmonary arteriovenous fistula simulating residual defect after transcatheter closure of patent foramen ovale for recurrent paradoxical embolism

scientific article published in March 2005

Reply

scientific article published on 30 July 2016

Reply to Satheshkumar and Moss: Poxvirus transcriptome analysis.

scholarly article

Reporting and connecting cell type names and gating definitions through ontologies

scientific article published on 25 April 2019

Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.

scientific article published in November 2017

Reproducibility and conflicts in immune epitope data

scientific article

Restricted myeloperoxidase epitopes drive the adaptive immune response in MPO-ANCA vasculitis

scientific article published on 02 August 2019

Selective CD4+ T cell help for antibody responses to a large viral pathogen: deterministic linkage of specificities

scientific article published on June 2008

Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans

scientific article

Selective inhibition of CD4+ T-cell cytokine production and autoimmunity by BET protein and c-Myc inhibitors

scientific article

Sequence conservation predicts T cell reactivity against ragweed allergens

scientific article published on 30 June 2016

Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles

scientific article published on 17 August 2017

Single-cell transcriptomic analysis of allergen-specific T cells in allergy and asthma

scientific article published on 01 June 2020

Standardization of assay representation in the Ontology for Biomedical Investigations

scientific article published on 16 June 2021

Sterile immunity to malaria after DNA prime/adenovirus boost immunization is associated with effector memory CD8+T cells targeting AMA1 class I epitopes

scientific article

Strategies to query and display allergy-derived epitope data from the immune epitope database

scientific article

Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5

scientific article

Structural and Functional Characterization of Anti-A33 Antibodies Reveal a Potent Cross-Species Orthopoxviruses Neutralizer

scientific article published on September 2015

Structural consensus among antibodies defines the antigen binding site

scientific article

Structure-function characterization of three human antibodies targeting the vaccinia virus adhesion molecule D8.

scientific article published on 9 November 2017

Substantial gaps in knowledge of Bordetella pertussis antibody and T cell epitopes relevant for natural immunity and vaccine efficacy

scientific article published on 12 February 2014

T Cell Epitope Predictions

scientific article published on 11 February 2020

T Cell Responses to Neural Autoantigens Are Similar in Alzheimer's Disease Patients and Age-Matched Healthy Controls

scientific article published on 27 August 2020

T cell responses to known allergen proteins are differently polarized and account for a variable fraction of total response to allergen extracts

scientific article

T cell-mediated hypersensitivity reactions to drugs

scientific article

T cells from patients with Parkinson's disease recognize α-synuclein peptides

scientific article

T-cell epitope conservation across allergen species is a major determinant of immunogenicity

scientific article published on 13 February 2016

T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome

scientific article published on 20 January 2016

TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes

scientific article published on 10 October 2019

Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals

scientific article published on 20 May 2020

Temporal intra-individual variation of immunological biomarkers in type 1 diabetes patients: implications for future use in cross-sectional assessment

scientific article

TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates

scientific article published on August 2016

Th1 versus Th2 T cell polarization by whole-cell and acellular childhood pertussis vaccines persists upon re-immunization in adolescence and adulthood

scientific article published on 14 May 2016

Th1/Th17 polarization persists following whole-cell pertussis vaccination despite repeated acellular boosters

scientific article published on 06 August 2018

The CD8+ T-cell response to lymphocytic choriomeningitis virus involves the L antigen: uncovering new tricks for an old virus

scientific article published on 28 February 2007

The Challenge of Distinguishing Cell-Cell Complexes from Singlet Cells in Non-Imaging Flow Cytometry and Single-Cell Sorting

scientific article published on 13 May 2020

The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases

scientific article published on 19 November 2019

The Immune Epitope Database (IEDB): 2018 update

scholarly article by Randi Vita et al published 24 October 2018 in Nucleic Acids Research

The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook

scientific article published on 25 November 2019

The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design

scientific article

The Immune Epitope Database: How Data Are Entered and Retrieved

scientific article

The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference

scientific article published on 18 January 2016

The Ontology for Biomedical Investigations

scientific article

The SysteMHC Atlas project

scientific article published on 29 July 2017

The Use of the Immune Epitope Database to Study Autoimmune Epitope Data Related to Alopecia Areata

scientific article

The common equine class I molecule Eqca-1*00101 (ELA-A3.1) is characterized by narrow peptide binding and T cell epitope repertoires

scientific article

The design and implementation of the immune epitope database and analysis resource

scientific article published on 14 May 2005

The development and application of a quantitative peptide microarray based approach to protein interaction domain specificity space

scientific article

The high frequency Indian rhesus macaque MHC class I molecule, Mamu-B*01, does not appear to be involved in CD8+ T lymphocyte responses to SIVmac239

scientific article published on 01 November 2005

The human CD8+ T cell responses induced by a live attenuated tetravalent dengue vaccine are directed against highly conserved epitopes

scientific article

The identification of potentially pathogenic and therapeutic epitopes from common human allergens

scientific article published on 15 November 2012

The immune epitope database (IEDB) 3.0.

scientific article

The immune epitope database 2.0.

scientific article

The immune epitope database and analysis resource: from vision to blueprint

scientific article

The immune epitope database: a historical retrospective of the first decade

scientific article published on October 2012

The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype

scientific article

The role of stents in the treatment of congenital heart disease: Current status and future perspectives

scientific article

The structural basis of HLA-associated drug hypersensitivity syndromes

scientific article

TiArA: a virtual appliance for the analysis of Tiling Array data

scientific article

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

scientific article published in March 2007

Towards defining molecular determinants recognized by adaptive immunity in allergic disease: an inventory of the available data

scientific article

Towards the prediction of non-peptidic epitopes

scientific article published on 18 February 2022

Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove

scientific article published on 29 January 2016

Transcatheter therapy of long extreme subatretic aortic coarctations with covered stents

scientific article published in October 2004

Transcriptional Profiling of Th2 Cells Identifies Pathogenic Features Associated with Asthma

scientific article published on 6 June 2016

Transcriptional analysis of peripheral memory T cells reveals Parkinson's disease-specific gene signatures

scientific article published on 21 March 2022

Transcriptional profile of tuberculosis antigen-specific T cells reveals novel multifunctional features

scientific article

Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis

scientific article published on 30 March 2018

Two kinetic patterns of epitope-specific CD8 T-cell responses following murine gammaherpesvirus 68 infection

scientific article

Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT.

scientific article

Uncovering the interplay between CD8, CD4 and antibody responses to complex pathogens.

scientific article

Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA.

scientific article

Unusual features of vaccinia virus extracellular virion form neutralization resistance revealed in human antibody responses to the smallpox vaccine

scientific article published on 14 November 2012

Urinary Peptides As a Novel Source of T Cell Allergen Epitopes

scientific article

Using a combined computational-experimental approach to predict antibody-specific B cell epitopes

scientific article published on 13 March 2014

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

VO: Vaccine Ontology

Vaccine Strain-Specificity of Protective HLA-Restricted Class 1 P. falciparum Epitopes

scientific article

Vaccinia virus-specific CD4+ T cell responses target a set of antigens largely distinct from those targeted by CD8+ T cell responses

scientific article

Variability in German Cockroach Extract Composition Greatly Impacts T Cell Potency in Cockroach-Allergic Donors

article

Widespread Tau-Specific CD4 T Cell Reactivity in the General Population

scientific article published on 13 May 2019

moGSA: integrative single sample gene-set analysis of multiple omics data

article

α-Synuclein-specific T cell reactivity is associated with preclinical and early Parkinson's disease

scientific article published on 20 April 2020

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