List of works - Christine Vogel

A Multifactorial Variant of the Attributable Risk for Groups of Exposure Variables

article published in 2001

A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes

scientific article published on 12 January 2020

A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes

scientific article

Absolute abundance for the masses

scientific article published on September 2009

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

scientific article

Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation

scientific article

Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data

scientific article

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput

scientific article

Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks

scientific article published in April 2018

Duplication, divergence and formation of novel protein topologies

scientific article published on October 2006

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research

scientific article

Evaluation of determinants of the serological response to the quadrivalent split‐inactivated influenza vaccine

Evolution of the protein repertoire

scientific article

Evolution. Protein expression under pressure

scientific article published in November 2013

Exploiting Interdata Relationships in Next-generation Proteomics Analysis

scientific article published on 24 May 2019

Forward genetic in planta screen for identification of plant-protective traits of Sphingomonas sp. strain Fr1 against Pseudomonas syringae DC3000.

scientific article

Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes

scientific article published on 03 March 2009

Global signatures of protein and mRNA expression levels

scientific article

Glucosinolate biosynthesis: demonstration and characterization of the condensing enzyme of the chain elongation cycle in Eruca sativa

scientific article published in April 2004

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect

scientific article published on 13 January 2016

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

scientific article published on 13 March 2012

Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum

scientific article

Integration of large-scale multi-omic datasets: a protein-centric view

scientific article published on 08 September 2018

K63 polyubiquitination is a new modulator of the oxidative stress response

scientific article

Label-Free Protein Quantitation Using Weighted Spectral Counting ⬇️

scientific article published on January 1, 2012

MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines

scientific article

Mass spectrometry analysis of K63-ubiquitinated targets in response to oxidative stress

scientific article published on 21 May 2015

Mining gene functional networks to improve mass-spectrometry-based protein identification

scientific article published on 24 July 2009

New insights into the cellular temporal response to proteostatic stress

scientific article published on 12 October 2018

One third of dynamic protein expression profiles can be predicted by a simple rate equation

scientific article

PECA: a novel statistical tool for deconvoluting time-dependent gene expression regulation

scientific article published on 26 November 2013

PECAplus: statistical analysis of time-dependent regulatory changes in dynamic single-omics and dual-omics experiments

scientific article published on 19 December 2017

PTMscape: an open source tool to predict generic post-translational modifications and map modification crosstalk in protein domains and biological processes

scientific article published on 01 June 2018

Phenazines regulate Nap-dependent denitrification in Pseudomonas aeruginosa biofilms

scientific article published on 20 February 2018

Protein Expression Regulation under Oxidative Stress ⬇️

scientific article published on September 20, 2011

Protein abundances are more conserved than mRNA abundances across diverse taxa

scientific article

Protein family expansions and biological complexity

scientific article

Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains

scientific article

Quantifying gene expression: the importance of being subtle

scientific article published on 20 October 2016

Quantifying protein (dis)order

scientific article published in February 2017

RNA binding protein-mediated post-transcriptional gene regulation in medulloblastoma

scientific article published on 06 March 2014

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

scientific article

Statistical approach to protein quantification

scientific article

Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons.

scientific article published on 3 June 2019

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

scientific article published on 27 August 2020

Structure, function and evolution of multidomain proteins

scientific article published on April 2004

Supra-domains: evolutionary units larger than single protein domains

scientific article

Systems Approaches to the Eukaryotic Stress Response

scientific article

The (in)dependence of alternative splicing and gene duplication

scientific article

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results

scientific article published on 9 December 2008

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health.

scientific article

The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis

scientific article

The SUPERFAMILY database in 2004: additions and improvements

scientific article

The SUPERFAMILY database in 2007: families and functions

scientific article

The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity

scientific article published in December 2003

The proteomic response to mutants of the Escherichia coli RNA degradosome

scientific article published on April 2013

The relationship between domain duplication and recombination

scientific article

Translation regulation gets its 'omics' moment

scientific article published on 15 May 2013

Translation's coming of age ⬇️

scientific article published on May 24, 2011

List of works by Christine Vogel

A Multifactorial Variant of the Attributable Risk for Groups of Exposure Variables

A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes

A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes

Absolute abundance for the masses

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation

Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput

Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks

Duplication, divergence and formation of novel protein topologies

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research

Evaluation of determinants of the serological response to the quadrivalent split‐inactivated influenza vaccine

Evolution of the protein repertoire

Evolution. Protein expression under pressure

Exploiting Interdata Relationships in Next-generation Proteomics Analysis

Forward genetic in planta screen for identification of plant-protective traits of Sphingomonas sp. strain Fr1 against Pseudomonas syringae DC3000.

Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes

Global signatures of protein and mRNA expression levels

Glucosinolate biosynthesis: demonstration and characterization of the condensing enzyme of the chain elongation cycle in Eruca sativa

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum

Integration of large-scale multi-omic datasets: a protein-centric view

K63 polyubiquitination is a new modulator of the oxidative stress response

Label-Free Protein Quantitation Using Weighted Spectral Counting ⬇️

MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines

Mass spectrometry analysis of K63-ubiquitinated targets in response to oxidative stress

Mining gene functional networks to improve mass-spectrometry-based protein identification

New insights into the cellular temporal response to proteostatic stress

One third of dynamic protein expression profiles can be predicted by a simple rate equation

PECA: a novel statistical tool for deconvoluting time-dependent gene expression regulation

PECAplus: statistical analysis of time-dependent regulatory changes in dynamic single-omics and dual-omics experiments

PTMscape: an open source tool to predict generic post-translational modifications and map modification crosstalk in protein domains and biological processes

Phenazines regulate Nap-dependent denitrification in Pseudomonas aeruginosa biofilms

Protein Expression Regulation under Oxidative Stress ⬇️

Protein abundances are more conserved than mRNA abundances across diverse taxa

Protein family expansions and biological complexity

Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains

Quantifying gene expression: the importance of being subtle

Quantifying protein (dis)order

RNA binding protein-mediated post-transcriptional gene regulation in medulloblastoma

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

Statistical approach to protein quantification

Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons.

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

Structure, function and evolution of multidomain proteins

Supra-domains: evolutionary units larger than single protein domains

Systems Approaches to the Eukaryotic Stress Response

The (in)dependence of alternative splicing and gene duplication

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health.

The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis

The SUPERFAMILY database in 2004: additions and improvements

The SUPERFAMILY database in 2007: families and functions

The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity

The proteomic response to mutants of the Escherichia coli RNA degradosome

The relationship between domain duplication and recombination

Translation regulation gets its 'omics' moment

Translation's coming of age ⬇️

iSUMO - integrative prediction of functionally relevant SUMOylation events