List of works by Ilya Borovok

A multidomain fusion protein in Listeria monocytogenes catalyzes the two primary activities for glutathione biosynthesis

scientific article

A new perspective on lysogeny: prophages as active regulatory switches of bacteria.

scientific article published in September 2015

A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.

scientific article published in July 2006

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

scientific article

Alternative oxygen-dependent and oxygen-independent ribonucleotide reductases in Streptomyces: cross-regulation and physiological role in response to oxygen limitation

scientific article published in November 2004

An Extended Cyclic Di-GMP Network in the Predatory Bacterium Bdellovibrio bacteriovorus

scientific article

Analysis of transcription of the Staphylococcus aureus aerobic class Ib and anaerobic class III ribonucleotide reductase genes in response to oxygen.

scientific article

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

Bacterial cadherin domains as carbohydrate binding modules: determination of affinity constants to insoluble complex polysaccharides

scientific article

Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.

scientific article published on 29 October 2010

Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus

scientific article published on 17 October 2008

Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens.

scientific article

Cellulosomics of the cellulolytic thermophile Clostridium clariflavum

scientific article

Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen

scientific article

Characterization of RAP, a quorum sensing activator of Staphylococcus aureus.

scientific article

Clostridium thermocellum cellulosomal genes are regulated by extracytoplasmic polysaccharides via alternative sigma factors.

scientific article

Coenzyme B12 controls transcription of the Streptomyces class Ia ribonucleotide reductase nrdABS operon via a riboswitch mechanism

scientific article published in April 2006

Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T

scientific article

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

scientific article published on 10 February 2017

Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens

scientific article

Controlled branched-chain amino acids auxotrophy in Listeria monocytogenes allows isoleucine to serve as a host signal and virulence effector. ⬇️

scientific article

Coordination of cohabiting phage elements supports bacteria-phage cooperation

scientific article published on 21 November 2019

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases

scientific article

Crystallization and preliminary X-ray analysis of a cohesin-like module from AF2375 of the archaeon Archaeoglobus fulgidus.

scientific article published on 26 February 2009

Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System.

scientific article published on 5 January 2016

Diamide triggers mainly S Thiolations in the cytoplasmic proteomes of Bacillus subtilis and Staphylococcus aureus.

scientific article published on 16 October 2009

Discovery and characterization of cadherin domains in Saccharophagus degradans 2-40.

scientific article published on 18 December 2009

Distinctive ligand-binding specificities of tandem PA14 biomass-sensory elements from Clostridium thermocellum and Clostridium clariflavum

scientific article published on 25 June 2019

Distribution and infection-related functions of bacillithiol in Staphylococcus aureus.

scientific article published on 6 March 2013

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1

scientific article

Draft Genome Sequence of the Cellulolytic Bacterium Clostridium papyrosolvens C7 (ATCC 700395)

scientific article published on 12 September 2013

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

scientific article

Faecal Proteases from Pouchitis Patients Activate Protease Activating Receptor-2 to Disrupt the Epithelial Barrier

scientific article published on 01 December 2019

Ferrous active site of isopenicillin N synthase: genetic and sequence analysis of the endogenous ligands

scientific article

Fine-structural variance of family 3 carbohydrate-binding modules as extracellular biomass-sensing components of Clostridium thermocellum anti-σI factors

scientific article

Functional analysis of the Streptomyces coelicolor NrdR ATP-cone domain: role in nucleotide binding, oligomerization, and DNA interactions.

scientific article published on December 2008

Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome

scientific article published on 22 December 2014

Gene organization in the trxA/B-oriC region of the Streptomyces coelicolor chromosome and comparison with other eubacteria.

scientific article published on September 1998

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays

scientific article

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

scientific article

Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum

scientific article published on 06 September 2010

High Prevalence of Diverse Insertion Sequences within the rRNA Operons of Mycoplasma bovis

scientific article published on 19 August 2016

High efficiency of a sequential recombinase-mediated cassette exchange reaction in Escherichia coli

scientific article

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

scientific article published on 18 September 2017

Identification and characterization of gshA, a gene encoding the glutamate-cysteine ligase in the halophilic archaeon Haloferax volcanii.

scientific article published on 12 June 2009

Implications of the inability of Listeria monocytogenes EGD-e to grow anaerobically due to a deletion in the class III NrdD ribonucleotide reductase for its use as a model laboratory strain

scientific article

Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence

scientific article

Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603

scientific article

Noncellulosomal cohesin from the hyperthermophilic archaeon Archaeoglobus fulgidus

scientific article

Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

scientific article

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

scientific article published in February 2018

NrdR controls differential expression of the Escherichia coli ribonucleotide reductase genes.

scientific article published on 11 May 2007

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

scientific article

Pore mutations affecting tetrameric assembly and functioning of the potassium channel KcsA from Streptomyces lividans

scientific article published on 01 April 2000

Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence

scientific article published in August 2012

Quorum sensing in Staphylococci is regulated via phosphorylation of three conserved histidine residues

scientific article

Recent advances in the structure and function of isopenicillin N synthase

scientific article

Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum.

scientific article published on 3 February 2017

Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.

scientific article

Ruminococcal cellulosome systems from rumen to human.

scientific article published on 3 April 2015

Standalone cohesin as a molecular shuttle in cellulosome assembly.

scientific article published on 17 April 2015

Staphylococcus aureus ArcR controls expression of the arginine deiminase operon

scientific journal article

Staphylococcus aureus NrdH redoxin is a reductant of the class Ib ribonucleotide reductase

scientific article

Streptomyces spp. contain class Ia and class II ribonucleotide reductases: expression analysis of the genes in vegetative growth.

scientific article published on February 2002

Structural characterization of a novel autonomous cohesin fromRuminococcus flavefaciens

scientific article

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum

scientific article (publication date: 8 May 2013)

Structure of a family 3a carbohydrate-binding module from the cellulosomal scaffoldin CipA ofClostridium thermocellumwith flanking linkers: implications for cellulosome structure

scientific article

Structure-function studies of the non-heme iron active site of isopenicillin N synthase: some implications for catalysis

scientific article published on 01 August 2000

Temperate bacteriophages as regulators of host behavior

scientific article

The Streptomyces NrdR transcriptional regulator is a Zn ribbon/ATP cone protein that binds to the promoter regions of class Ia and class II ribonucleotide reductase operons

scientific article published on September 2006

The glutamine ligand in the ferrous iron active site of isopenicillin N synthase of Streptomyces jumonjinensis is not essential for catalysis

scientific article published on 01 March 1997

The metabolic regulator CodY links Listeria monocytogenes metabolism to virulence by directly activating the virulence regulatory gene prfA.

scientific article

The mycelium-associated Streptomyces reticuli catalase-peroxidase, its gene and regulation by FurS.

scientific article

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

scientific article published on 23 April 2010

Three cellulosomal xylanase genes in Clostridium thermocellum are regulated by both vegetative SigA (σ(A)) and alternative SigI6 (σ(I6)) factors.

scientific article published on 28 August 2015

Transcriptional regulation of the Staphylococcus aureus thioredoxin and thioredoxin reductase genes in response to oxygen and disulfide stress.

scientific article

Transposon Tn5 and its derivatives effectively transpose over a broad temperature range

scientific article published on 01 September 1990

[Formation of covalently-bound circular structures of transposon TnV (Tn5-Rep pSC101) during transposition]

scientific article published on 01 January 1989

[Plasmids of Azospirillum brasilense]

scientific article published on 01 January 1985

[Transposition of the composite synthetic transposon TnV (Tn5-Rep(pSC101)) is accompanied by the formation of the mini-plasmid pTnV, containing defective Is50-elements]

scientific article published on 01 September 1990

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