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List of works by Joseph D. Manthey

A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation

scientific article

A genomic investigation of the putative contact zone between divergent Brown Creeper (Certhia americana) lineages: chromosomal patterns of genetic differentiation

scientific article published on 20 November 2015

A test of niche centrality as a determinant of population trends and conservation status in threatened and endangered North American birds

scientific article (publication date: 22 January 2015)

Biodiversity genomics of North American Dryobates woodpeckers reveals little gene flow across the D. nuttallii x D. scalaris contact zone

scientific article (publication date: 13 April 2019)

Chromosomal patterns of diversity and differentiation in creepers: a next-gen phylogeographic investigation of Certhia americana

scientific article published on 8 April 2015

Comparative phylogeography and niche modeling for three species complexes of SE China (Paradoxornis spp., Pycnonotus spp., Spizixos spp.)

scientific article (publication date: 1 October 2015)

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

scientific article published on 28 January 2016

Conservation genomics of the silktail (Aves: Lamprolia victoriae) suggests the need for increased protection of native forest on the Natewa Peninsula, Fiji

Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana).

scientific article

De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus

scientific article (publication date: January 2021)

Diversification in a biodiversity hotspot: genomic variation in the river frog Amietia nutti across the Ethiopian Highlands

scientific article (publication date: December 2017)

Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation.

scientific article published on 17 October 2016

Diversification of African tree frogs (genus Leptopelis) in the highlands of Ethiopia

scientific article published on 30 March 2018

Effects of climate change on the evolution of Brown Creeper (Certhia americana) lineages

scientific article (publication date: 1 October 2014)

Extensive paraphyly in the typical owl family (Strigidae)

scientific article (publication date: 2 January 2020)

Gene flow and rapid differentiation characterize a rapid insular radiation in the southwest Pacific (Aves: Zosterops)

scientific article published on 14 June 2020

Genomic differentiation in an endemic Philippine genus (Aves: <i>Sarcophanops</i>) owing to geographical isolation on recently disassociated islands

scientific article published on 21 October 2020

Genomic differentiation in an endemic Philippine genus (Aves: Sarcophanops) owing to geographical isolation on recently disassociated islands

scientific article (publication date: December 2020)

Genomic insights into hybridization in a localized region of sympatry between pewee sister species (Contopus sordidulus × C. virens) and their chromosomal patterns of differentiation

Genomic phylogeography of the endemic Mountain Black-eye of Borneo (Chlorocharis emiliae): montane and lowland populations differ in patterns of Pleistocene diversification

scientific article (publication date: 21 June 2017)

Increased differentiation and reduced gene flow in sex chromosomes relative to autosomes between lineages of the Brown Creeper (Certhia americana)

scientific article (publication date: 04 December 2013)

Is gene flow promoting the reversal of pleistocene divergence in the Mountain Chickadee (Poecile gambeli)?

scientific article (publication date: 2012)

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

scientific article published on 2 July 2015

Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae).

scientific article published on 21 September 2011

Mitochondrial genomes of the bird genus Piranga: rates of sequence evolution, and discordance between mitochondrial and nuclear markers

scientific article published on 16 July 2019

Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies).

scientific article

Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis

scientific article published on 01 July 2019

Relationship of genetic diversity and niche centrality: a survey and analysis

scientific article

Relationships of morphological groups in the northern flicker superspecies complex (Colaptes auratus & C. chrysoides)

scientific article (publication date: 20 October 2016)

Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data.

scientific article published in February 2018

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

scientific article

The Mobilome of Reptiles: Evolution, Structure, and Function

scientific article published on 09 February 2019

Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley

scientific article published in 2022

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