List of works - Andrea Manica

A Global Assessment of Amphibian Taxonomic Effort and Expertise

A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations

scientific article

A comprehensive history of climate and habitat stability of the last 800&thinsp,000 years

A curated dataset of modern and ancient high-coverage shotgun human genomes

publication published on 04 August 2021

A genomic Neolithic time transect of hunter-farmer admixture in central Poland

scientific article published in Scientific Reports

A genomic history of Aboriginal Australia

scientific article (publication date: 21 September 2016)

A global perspective on trends in nature-based tourism

scientific article

A global-level assessment of the effectiveness of protected areas at resisting anthropogenic pressures

scientific article published on 28 October 2019

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

scientific article

A role for partially protected areas on coral reefs: maintaining fish diversity?

A statistics-based reconstruction of high-resolution global terrestrial climate for the last 800,000 years

scientific article published in 2021

Addendum: High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years

scientific article published in 2021

Aggression, segregation and stability in a dominance hierarchy.

scientific article published on 6 January 2010

An Aboriginal Australian genome reveals separate human dispersals into Asia

scientific article (publication date: 7 October 2011)

An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization

scientific article

An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

scientific article

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

scientific article published on 16 December 2019

Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent.

scientific article

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

scientific article published on 5 October 2017

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

scientific article published in Science

Ancient human parallel lineages within North America contributed to a coastal expansion

scientific article published in Science

Ancient trade routes shaped the genetic structure of horses in eastern Eurasia

scientific article

Author Correction: An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization

scientific article published on 9 January 2018

Author Correction: Simulation-based reconstruction of global bird migration over the past 50,000 years

scientific article published on 31 March 2020

Autosomal genetic diversity in non-breed horses from eastern Eurasia provides insights into historical population movements

scientific article published on 21 May 2012

Benefits and Costs of Dominance in the Angelfish Centropyge bicolor

Bias in null model analyses of species co-occurrence: A response to Gotelli and Ulrich (2011)

article

Bolder stickleback fish make faster decisions, but they are not less accurate

article by D. Mamuneas et al published 15 September 2014 in Behavioral Ecology

Boldness and Information Use in Three-Spined Sticklebacks

Calibrating conservation: new tools for measuring success

article

California swordfish fishery: Maximizing the catch rate of a target species simultaneously minimizes bycatch rates

scientific article published on 19 March 2019

Capturing the many dimensions of threat: comment on Salafsky et al.

scientific article published in April 2009

Climate shaped how Neolithic farmers and European hunter-gatherers interacted after a major slowdown from 6,100 BCE to 4,500 BCE

scientific article published on 06 July 2020

Commercializing bycatch can push a fishery beyond economic extinction

article by Aaron Savio Lobo et al published 9 April 2010 in Conservation Letters

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly

scientific article

Consistency in migration strategies and habitat preferences of brown skuas over two winters, a decade apart

article

Cover Image

scientific article published on 9 December 2021

Current Approaches in Spatial Genetics

article

Defining and Measuring Success in Conservation

Detecting and Removing Ascertainment Bias in Microsatellites from the HGDP-CEPH Panel ⬇️

scientific article published on November 1, 2011

Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

scientific article published in 2018

Distance from Africa, not climate, explains within-population phenotypic diversity in humans

scientific article published in March 2009

Distribution and use of income from bushmeat in a rural village, central Gabon.

scientific article published on December 2010

Domestication via the commensal pathway in a fish-invertebrate mutualism

scientific article published on 07 December 2020

Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins

scientific article (publication date: 28 August 2012)

Effect of the Presence of Subordinates on Dominant Female Behaviour and Fitness in Hierarchies of the Dwarf Angelfish Centropyge bicolor

Empirical phylogenies and species abundance distributions are consistent with preequilibrium dynamics of neutral community models with gene flow.

scientific article published on 17 March 2017

Energy efficiency drives the global seasonal distribution of birds

scientific article published on 07 May 2018

Environmental drivers of movement in a threatened seabird: insights from a mechanistic model and implications for conservation

scientific article published in 2020

Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea.

scientific article published on 20 January 2014

Estimating economic losses to tourism in Africa from the illegal killing of elephants

scientific article (publication date: November 2016)

Estimating mobility using sparse data: Application to human genetic variation

scientific article

European domestic horses originated in two holocene refugia

scientific article (publication date: 30 March 2011)

Evidence for conditional cooperation: a response to Schlicht et al

article

Evidence of resource partitioning between fin and sei whales during the twentieth-century whaling period

scientific article published in 2022

Evolution of personality differences in leadership

scientific article

Experience overrides personality differences in the tendency to follow but not in the tendency to lead

scientific article published in 2013

Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants

scientific article

Female scissortail sergeants (Pisces: Pomacentridae) use test eggs to choose good fathers

scientific article (publication date: 2010)

Fish choose appropriately when and with whom to collaborate

scientific article

Flexibility in foraging strategies of Brown Skuas in response to local and seasonal dietary constraints

Food intake rates of inactive fish are positively linked to boldness in three-spined sticklebacks Gasterosteus aculeatus

scientific article published on 4 March 2016

Foraging behaviour and habitat use by brown skuas Stercorarius lonnbergi breeding at South Georgia

scientific article published in 2014

Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago

scientific article

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

scientific article published on 17 September 2013

Genomic analyses inform on migration events during the peopling of Eurasia

scientific article (publication date: 13 October 2016)

Genomic evidence for the Pleistocene and recent population history of Native Americans

scientific article

Global assessment of marine plastic exposure risk for oceanic birds

Global demographic history of human populations inferred from whole mitochondrial genomes

Global geometric morphometric analyses of the human pelvis reveal substantial neutral population history effects, even across sexes

scientific article (publication date: 2013)

Heterogeneous structure in mixed-species corvid flocks in flight

article

High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years

scientific article published on 14 July 2020

Highlighting nonlinear patterns in population genetics datasets

scientific article

Historical and projected future range sizes of the world's mammals, birds, and amphibians

scientific article published on 06 November 2020

Hollywood, climate change, and the public

scientific article published on 01 September 2004

How Levins’ dynamics emerges from a Ricker metapopulation model

scholarly article by Federico Elías-Wolff et al published 24 September 2015 in Theoretical Ecology

Human variation in the shape of the birth canal is significant and geographically structured

article

Impacts of the live reef fish trade on populations of coral reef fish off northern Borneo

scientific article published on 01 April 2007

Improved calibration of the human mitochondrial clock using ancient genomes

scientific article

Improving assessments of data‐limited populations using life‐history theory

scientific article published on 08 March 2021

Inability of the most commonly used forensic genetic markers to distinguish between samples belonging to different ethnicities of Pakistan with diverse genetic background

scientific article published on 21 January 2016

Infections on the move: how transient phases of host movement influence disease spread.

scientific article

Inferring allele frequency trajectories from ancient DNA indicates that selection on a chicken gene coincided with changes in medieval husbandry practices

scientific article published on 21 April 2017

Initiative, personality and leadership in pairs of foraging fish

scientific article (publication date: 2012)

Keeping bandits at bay?

scientific article published in August 2006

Korean Genome Project: 1094 Korean personal genomes with clinical information

scientific article published on 27 May 2020

Land-use strategies to balance livestock production, biodiversity conservation and carbon storage in Yucatán, Mexico

scientific article

Late Pleistocene climate change and the global expansion of anatomically modern humans

scientific article

Late Quaternary horses in Eurasia in the face of climate and vegetation change

article

Leadership, personality and social feedback

scientific article published on July 2009

Long-term changes in population size, distribution and productivity of skuas (Stercorarius spp.) at Signy Island, South Orkney Islands

Mapping global diversity patterns for migratory birds

scientific article

Minke whale genome and aquatic adaptation in cetaceans

scientific article

Mismatches between conservation outcomes and management evaluation in protected areas: A case study in the Brazilian Cerrado

article

Modern wolves trace their origin to a late Pleistocene expansion from Beringia

article published in 2018

Outcomes, not implementation, predict conservation success

article

Pairs of Fish Resolve Conflicts over Coordinated Movement by Taking Turns

scientific article published on 14 January 2010

Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years

scientific article

Parallel adaptation of rabbit populations to myxoma virus

scientific article published on 14 February 2019

Parental care trade-offs and life-history relationships in insects.

scientific article

Personality counts: the effect of boldness on shoal choice in three-spined sticklebacks

Picky predators and odd prey: colour and size matter in predator choice and zebrafish’s vulnerability – a refinement of the oddity effect

scientific article published in 2019

Plasmodium falciparum accompanied the human expansion out of Africa.

scientific article published on 17 June 2010

Predicting Global Patterns in Mangrove Forest Biomass

scholarly article by James Hutchison et al published 20 September 2013 in Conservation Letters

Process-explicit models reveal pathway to extinction for woolly mammoth using pattern-oriented validation

scientific article published on 18 February 2021

Process‐explicit models reveal pathway to extinction for woolly mammoth using pattern‐oriented validation

scientific article

Protected Area Effectiveness in Reducing Conversion in a Rapidly Vanishing Ecosystem: The Brazilian Cerrado

article

Proximate drivers of spatial segregation in non-breeding albatrosses

scientific article published on 21 July 2016

Quantifying individual specialization using tracking data: a case study on two species of albatrosses

scientific article published on 08 September 2018

Quantifying the benefits and costs of parental care in assassin bugs

scientific article published in 2010

Quantitative global analysis of the role of climate and people in explaining late Quaternary megafaunal extinctions

scientific article

Recent social conditions affect boldness repeatability in individual sticklebacks

scientific article published on February 2016

Reciprocity and conditional cooperation between great tit parents

scientific article published in 2013

Reconstructing the origin and spread of horse domestication in the Eurasian steppe

scientific article

Reducing over-reporting of deterministic co-occurrence patterns in biotic communities

article published in 2010

Referential gestures in fish collaborative hunting

scientific article

Relationship between roving behaviour and the diet and client composition of the cleaner fish Labroides bicolor.

scientific article

Repeatable group differences in the collective behaviour of stickleback shoals across ecological contexts.

scientific article published in February 2018

Reply to Lima-Ribeiro et al.: Human arrival scenarios have little influence on interpretations of late Quaternary extinctions

article published in the Proceedings of the National Academy of Sciences of the United States of America

Response of an Afro-Palearctic bird migrant to glaciation cycles

scientific article

Robustness despite uncertainty: regional climate data reveal the dominant role of humans in explaining global extinctions of Late Quaternary megafauna

article by Lewis J. Bartlett et al published 9 September 2015 in Ecography

Roving and Service Quality in the Cleaner WrasseLabroides bicolor

Sex-differences and temporal consistency in stickleback fish boldness

scientific article

Signatures of historical demography and pathogen richness on MHC class I genes

article

Simulation-based reconstruction of global bird migration over the past 50,000 years

scientific article published on 18 February 2020

Social and ecological change over a decade in a village hunting system, central Gabon.

scientific article

Social feedback and the emergence of leaders and followers

scientific article published on 29 January 2009

Surf and turf: predation by egg-eating snakes has led to the evolution of parental care in a terrestrial lizard

scientific article

Temperament and hunger interact to determine the emergence of leaders in pairs of foraging fish

scientific article

The configuration of Northern Hemisphere ice sheets through the Quaternary

scientific article published on 16 August 2019

The doubly conditioned frequency spectrum does not distinguish between ancient population structure and hybridization

scientific article (publication date: June 2014)

The emergence of the rescue effect from explicit within- and between-patch dynamics in a metapopulation ⬇️

scientific article published on 12 February 2014

The evolution of parental care in insects: A test of current hypotheses

scientific article

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

scientific article published on 21 October 2015

The genetics of an early Neolithic pastoralist from the Zagros, Iran

scientific article (publication date: 9 August 2016)

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

scientific article

The history of climate and society: a review of the influence of climate change on the human past

scientific article published in 2022

The interaction of neutral evolutionary processes with climatically-driven adaptive changes in the 3D shape of the human os coxae

scientific article

The relative role of drift and selection in shaping the human skull

scientific article published in January 2010

The role of previous social experience on risk-taking and leadership in three-spined sticklebacks

scientific article published in 2014

The role of social attraction and its link with boldness in the collective movements of three-spined sticklebacks

scientific article published on January 2015

The role of tactile interactions in flight responses in the Bronze Cory catfish (Corydoras aeneus)

article

The shadow of the future affects cooperation in a cleaner fish

scientific article published in June 2010

The whale shark genome reveals how genomic and physiological properties scale with body size

scientific article published on 04 August 2020

Unavoidable limits on group size in a body size-based linear hierarchy

scientific article published in 2010

Unravelling the genetic history of Negritos and indigenous populations of Southeast Asia.

scientific article published on 14 April 2015

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

scientific article (publication date: 16 November 2015)

Walk on the wild side: estimating the global magnitude of visits to protected areas

scientific article

When males live longer: Resource-driven territorial behavior drives sex-specific survival in snakes

scientific article published on 24 April 2019

Who directs group movement? Leader effort versus follower preference in stickleback fish of different personality.

scientific article

Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

scientific article

Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan

scientific article

Why do birds migrate? A macroecological perspective

article published in 2015

mtDNAcombine: tools to combine sequences from multiple studies

scientific article published on 09 March 2021

pastclim 1.2: an R package to easily access and use paleoclimatic reconstructions

scientific article published on 5 January 2023

List of works by Andrea Manica

A Global Assessment of Amphibian Taxonomic Effort and Expertise

A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations

A comprehensive history of climate and habitat stability of the last 800&thinsp,000 years

A curated dataset of modern and ancient high-coverage shotgun human genomes

A genomic Neolithic time transect of hunter-farmer admixture in central Poland

A genomic history of Aboriginal Australia

A global perspective on trends in nature-based tourism

A global-level assessment of the effectiveness of protected areas at resisting anthropogenic pressures

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

A role for partially protected areas on coral reefs: maintaining fish diversity?

A statistics-based reconstruction of high-resolution global terrestrial climate for the last 800,000 years

Addendum: High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years

Aggression, segregation and stability in a dominance hierarchy.

An Aboriginal Australian genome reveals separate human dispersals into Asia

An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization

An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent.

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

Ancient human parallel lineages within North America contributed to a coastal expansion

Ancient trade routes shaped the genetic structure of horses in eastern Eurasia

Author Correction: An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization

Author Correction: Simulation-based reconstruction of global bird migration over the past 50,000 years

Autosomal genetic diversity in non-breed horses from eastern Eurasia provides insights into historical population movements

Benefits and Costs of Dominance in the Angelfish Centropyge bicolor

Bias in null model analyses of species co-occurrence: A response to Gotelli and Ulrich (2011)

Bolder stickleback fish make faster decisions, but they are not less accurate

Boldness and Information Use in Three-Spined Sticklebacks

Calibrating conservation: new tools for measuring success

California swordfish fishery: Maximizing the catch rate of a target species simultaneously minimizes bycatch rates

Capturing the many dimensions of threat: comment on Salafsky et al.

Climate shaped how Neolithic farmers and European hunter-gatherers interacted after a major slowdown from 6,100 BCE to 4,500 BCE

Commercializing bycatch can push a fishery beyond economic extinction

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly

Consistency in migration strategies and habitat preferences of brown skuas over two winters, a decade apart

Cover Image

Current Approaches in Spatial Genetics

Defining and Measuring Success in Conservation

Detecting and Removing Ascertainment Bias in Microsatellites from the HGDP-CEPH Panel ⬇️

Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Distance from Africa, not climate, explains within-population phenotypic diversity in humans

Distribution and use of income from bushmeat in a rural village, central Gabon.

Domestication via the commensal pathway in a fish-invertebrate mutualism

Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins

Effect of the Presence of Subordinates on Dominant Female Behaviour and Fitness in Hierarchies of the Dwarf Angelfish Centropyge bicolor

Empirical phylogenies and species abundance distributions are consistent with preequilibrium dynamics of neutral community models with gene flow.

Energy efficiency drives the global seasonal distribution of birds

Environmental drivers of movement in a threatened seabird: insights from a mechanistic model and implications for conservation

Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea.

Estimating economic losses to tourism in Africa from the illegal killing of elephants

Estimating mobility using sparse data: Application to human genetic variation

European domestic horses originated in two holocene refugia

Evidence for conditional cooperation: a response to Schlicht et al

Evidence of resource partitioning between fin and sei whales during the twentieth-century whaling period

Evolution of personality differences in leadership

Experience overrides personality differences in the tendency to follow but not in the tendency to lead

Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants

Female scissortail sergeants (Pisces: Pomacentridae) use test eggs to choose good fathers

Fish choose appropriately when and with whom to collaborate

Flexibility in foraging strategies of Brown Skuas in response to local and seasonal dietary constraints

Food intake rates of inactive fish are positively linked to boldness in three-spined sticklebacks Gasterosteus aculeatus

Foraging behaviour and habitat use by brown skuas Stercorarius lonnbergi breeding at South Georgia

Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

Genomic analyses inform on migration events during the peopling of Eurasia

Genomic evidence for the Pleistocene and recent population history of Native Americans

Global assessment of marine plastic exposure risk for oceanic birds

Global demographic history of human populations inferred from whole mitochondrial genomes

Global geometric morphometric analyses of the human pelvis reveal substantial neutral population history effects, even across sexes

Heterogeneous structure in mixed-species corvid flocks in flight

High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years

Highlighting nonlinear patterns in population genetics datasets

Historical and projected future range sizes of the world's mammals, birds, and amphibians

Hollywood, climate change, and the public

How Levins’ dynamics emerges from a Ricker metapopulation model

Human variation in the shape of the birth canal is significant and geographically structured

Impacts of the live reef fish trade on populations of coral reef fish off northern Borneo

Improved calibration of the human mitochondrial clock using ancient genomes