List of works - Ivan Kulakovskiy

A promoter-level mammalian expression atlas

scientific article

Annotation of the local context of RNA secondary structure improves the classification and prediction of A-minors

scientific article published in 2021

DNA sequence motif: a jack of all trades for ChIP-Seq data.

scientific article

Deep and wide digging for binding motifs in ChIP-Seq data.

scientific article

Effects of cytosine methylation on transcription factor binding sites

scientific article

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites

scientific article

Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

article

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

scientific article

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

scientific article

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

scientific article published on 11 November 2017

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay

scientific article published on 23 June 2019

Intergenic, gene terminal, and intragenic CpG islands in the human genome

scientific article

Jaccard index based similarity measure to compare transcription factor binding site models

scientific article published on 30 September 2013

Motif discovery and motif finding from genome-mapped DNase footprint data

scientific article

Multifaceted deregulation of gene expression and protein synthesis with age

scientific article published on 23 June 2020

Negative selection maintains transcription factor binding motifs in human cancer.

scientific article

Positional weight matrices have sufficient prediction power for analysis of noncoding variants

scientific article published in 2022

Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia

scientific article

The Reduced Level of Inorganic Polyphosphate Mobilizes Antioxidant and Manganese-Resistance Systems in Saccharomyces cerevisiae

scientific article published on 15 May 2019

The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region

scientific article

svist4get: a simple visualization tool for genomic tracks from sequencing experiments

scientific article published on 06 March 2019

List of works by Ivan Kulakovskiy

A promoter-level mammalian expression atlas

Annotation of the local context of RNA secondary structure improves the classification and prediction of A-minors

DNA sequence motif: a jack of all trades for ChIP-Seq data.

Deep and wide digging for binding motifs in ChIP-Seq data.

Effects of cytosine methylation on transcription factor binding sites

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites

Functional annotation of human long noncoding RNAs via molecular phenotyping

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay

Intergenic, gene terminal, and intragenic CpG islands in the human genome

Jaccard index based similarity measure to compare transcription factor binding site models

Motif discovery and motif finding from genome-mapped DNase footprint data

Multifaceted deregulation of gene expression and protein synthesis with age

Negative selection maintains transcription factor binding motifs in human cancer.

Positional weight matrices have sufficient prediction power for analysis of noncoding variants

Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia

The Reduced Level of Inorganic Polyphosphate Mobilizes Antioxidant and Manganese-Resistance Systems in Saccharomyces cerevisiae

The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region

svist4get: a simple visualization tool for genomic tracks from sequencing experiments