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List of works by Bjoern H Menze

A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke

scientific article

A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

scientific article published on 10 July 2009

A diffusion model-free framework with echo time dependence for free-water elimination and brain tissue microstructure characterization

scientific article published on 23 March 2018

An Online Algorithm for Efficient and Temporally Consistent Subspace Clustering

An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset

publication published on 06 July 2021

Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care

scientific article published in Nature Communications

Automated Cardiac MR Scar Quantification in Hypertrophic Cardiomyopathy Using Deep Convolutional Neural Networks

scholarly article by Ahmed S Fahmy et al published December 2018 in JACC: Cardiovascular Imaging

Automated Whole-Body Bone Lesion Detection for Multiple Myeloma on 68Ga-Pentixafor PET/CT Imaging Using Deep Learning Methods

scientific article published on 8 January 2018

Automated estimation of tumor probability in prostate magnetic resonance spectroscopic imaging: pattern recognition vs quantification

scientific article published in January 2007

Automated processing of webcam images for phenological classification

scientific article

Automated vs. manual pattern recognition of 3D (1)H MRSI data of patients with prostate cancer

scientific article

Automatic segmentation of abdominal organs and adipose tissue compartments in water-fat MRI: Application to weight-loss in obesity

scientific article

Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach

Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks

scientific article published on 9 June 2016

Computational Simulation of Tumor Hypoxia Based on In Vivo Microvasculature Assessed in a Dorsal Skin Window Chamber

scientific article

Creating a Large-Scale Silver Corpus from Multiple Algorithmic Segmentations

Deep learning-enabled multi-organ segmentation in whole-body mouse scans

scientific article published on 06 November 2020

Detecting stable distributed patterns of brain activation using Gini contrast

scientific article

Diffusion tensor image features predict IDH genotype in newly diagnosed WHO grade II/III gliomas.

scientific article published on 17 October 2017

Efficient probabilistic model personalization integrating uncertainty on data and parameters: Application to eikonal-diffusion models in cardiac electrophysiology

scientific article

Enforcing Monotonous Shape Growth or Shrinkage in Video Segmentation

Estimating kinetic parameter maps from dynamic contrast-enhanced MRI using spatial prior knowledge

scientific article published on 14 April 2009

Exploring New Multimodal Quantitative Imaging Indices for the Assessment of Osseous Tumour Burden in Prostate Cancer using (68)Ga-PSMA-PET/CT.

scientific article published on 25 May 2017

Fast Anatomical Structure Localization Using Top-Down Image Patch Regression

From Large to Small Organ Segmentation in CT Using Regional Context

Fully convolutional network ensembles for white matter hyperintensities segmentation in MR images

scholarly article by Hongwei Li et al published December 2018 in NeuroImage

Global localization of 3D anatomical structures by pre-filtered Hough forests and discrete optimization

scientific article published on 17 March 2013

Hierarchical Multi-Organ Segmentation Without Registration in 3D Abdominal CT Images

High-resolution echo-planar spectroscopic imaging at ultra-high field

scientific article published on 27 July 2018

How to Exploit Weaknesses in Biomedical Challenge Design and Organization

Human-Drone-Interaction: A Case Study to Investigate the Relation Between Autonomy and User Experience

ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI.

scientific article published on 21 July 2016

Image guided personalization of reaction-diffusion type tumor growth models using modified anisotropic eikonal equations

scientific article published on 14 July 2009

Impact of Temporal Heterogeneity of Acute Hypoxia on the Radiation Response of Experimental Tumors

scientific article published on 01 January 2018

Importance of patient DTI's to accurately model glioma growth using the reaction diffusion equation

Joint 3-D vessel segmentation and centerline extraction using oblique Hough forests with steerable filters

scientific article published on 15 October 2014

Local Structure Prediction with Convolutional Neural Networks for Multimodal Brain Tumor Segmentation

scholarly article by Pavel Dvořák & Bjoern H Menze published 2016 in Lecture Notes in Computer Science

Machine learning analysis of whole mouse brain vasculature

scientific article published on 11 March 2020

Mapping Multi-Modal Routine Imaging Data to a Single Reference via Multiple Templates

Mapping patterns of long-term settlement in Northern Mesopotamia at a large scale

scientific article published on 19 March 2012

Mimicking the human expert: pattern recognition for an automated assessment of data quality in MR spectroscopic images

scientific article

Multimodal medical image analysis: from visualization to disease modeling

scientific article published in February 2011

Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy

scientific article published on 20 January 2007

Overview of the 2014 Workshop on Medical Computer Vision—Algorithms for Big Data (MCV 2014)

Overview of the 2015 Workshop on Medical Computer Vision — Algorithms for Big Data (MCV 2015)

article published in 2016

Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice

Predicting Future Bone Infiltration Patterns in Multiple Myeloma

Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution

scientific article published on 20 January 2014

Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation

scientific article published on 20 January 2014

Reconstructing cerebrovascular networks under local physiological constraints by integer programming

scientific article published on 23 April 2015

Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics

scientific article

S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging $$\tau $$τ-Leaping and R-Leaping

scientific article published on 10 July 2018

SU-C-BRB-05: Accounting for Anisotropic Growth of Glioma in Radiotherapy Planning

SU-E-T-486: Evaluation of the Fisher-Kolmogorov Glioma Growth Model for Radiotherapy Target Delineation

Segmentation of Skeleton and Organs in Whole-Body CT Images via Iterative Trilateration

scientific article published on 27 June 2017

Segmentation of image ensembles via latent atlases ⬇️

scientific article published on 4 June 2010

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images ⬇️

scientific article published on January 1, 2010

Spatial Distribution of Focal Lesions in Whole-Body MRI and Influence of MRI Protocol on Staging in Patients with Smoldering Multiple Myeloma According to the New SLiM-CRAB-Criteria

scientific article published on 07 September 2020

Spatial decision forests for MS lesion segmentation in multi-channel magnetic resonance images

scientific article published on 8 April 2011

Spatio-temporal video segmentation with shape growth or shrinkage constraint

scientific article published on 8 July 2014

SurvivalNet: Predicting patient survival from diffusion weighted magnetic resonance images using cascaded fully convolutional and 3D Convolutional Neural Networks

scholarly article published April 2017

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

scientific article

The federated tumor segmentation (FeTS) tool: an open-source solution to further solid tumor research

scientific article published in 2022

Three-dimensional holographic visualization of high-resolution myocardial scar on HoloLens

scientific article published in PLoS ONE

Tracing cell lineages in videos of lens-free microscopy

scientific article published on 05 June 2018

Using spatial prior knowledge in the spectral fitting of MRS images

scientific article published on 28 April 2011

VISCERAL: Towards Large Data in Medical Imaging — Challenges and Directions

scholarly article by Georg Langs et al published 2013 in Lecture Notes in Computer Science

Volumetry based biomarker speed of growth: Quantifying the change of total tumor volume in whole-body magnetic resonance imaging over time improves risk stratification of smoldering multiple myeloma patients.

scientific article published on 18 May 2018

W-Net for Whole-Body Bone Lesion Detection on $$^{68}$$ Ga-Pentixafor PET/CT Imaging of Multiple Myeloma Patients

WE-G-BRA-06: Radiotherapy Planning for Glioma Based on a Computational Tumor Growth Model

Wall shear stress estimation in the aorta: Impact of wall motion, spatiotemporal resolution, and phase noise

scientific article published in April 2018

Whole-body anatomy localization via classification and regression forests

scientific article published in December 2013

Why rankings of biomedical image analysis competitions should be interpreted with care ⬇️

scientific article published in Nature Communications

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