List of works by Jerry Jenkins

A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis

scientific article published on 10 April 2019

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

scientific article published on 06 October 2020

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

scientific article published on 05 October 2020

A genome-wide survey of switchgrass genome structure and organization

scientific article

A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

scientific article published on 6 July 2018

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

article

A reference genome for common bean and genome-wide analysis of dual domestications

scientific article published on 8 June 2014

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

scientific article

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

scientific article published on 14 February 2020

Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)

scientific article published on 18 July 2018

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Deeply conserved synteny resolves early events in vertebrate evolution

scientific article published on 20 April 2020

Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa)

scientific article

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

scientific article

Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis

scientific article

Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet

scientific article published in 2023

Genome evolution in the allotetraploid frog Xenopus laevis

scientific article

Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium)

scientific article published on 06 June 2019

Genome sequence of the model rice variety KitaakeX

scientific article published on 27 November 2019

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

scientific article published on 20 April 2020

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

scientific article published on 27 January 2021

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

scientific article published on 29 July 2020

Hemichordate genomes and deuterostome origins

scientific article

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

scientific article

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

scientific article

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

scientific article published in 2023

Optimizing genomic selection for blight resistance in American chestnut backcross populations: A trade-off with American chestnut ancestry implies resistance is polygenic

scientific article published on 29 December 2019

Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone

scientific article published on 01 October 2017

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient

scientific article published on 10 June 2019

Reference genome sequence of the model plant Setaria

scientific article

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

scientific article published in December 2012

Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

scientific article published on 26 January 2024

Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa

scientific article published on 24 July 2020

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

scientific article

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

scientific article

The P. patens chromosome-scale assembly reveals moss genome structure and evolution. ⬇️

scientific article

The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

scientific article

The Reference Genome of the Halophytic Plant Eutrema salsugineum

scientific article (publication date: 2013)

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

scientific article published on 21 November 2017

The a genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

scientific article published on 16 October 2018

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The genome of Eucalyptus grandis

scientific article

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

scientific article published on 27 January 2016

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

scientific article published on 01 May 2019

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

scientific article published in Nature Communications

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

scientific article

The reference genome and abiotic stress responses of the model perennial grass <i>Brachypodium sylvaticum</i>

scientific article published in 2023

The tepary bean genome provides insight into evolution and domestication under heat stress

scientific article published on 11 May 2021

Young inversion with multiple linked QTLs under selection in a hybrid zone.

scientific article

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