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List of works by Qiong Shi

A Chromosome-Level Genome Assembly of the Mandarin Fish (<i>Siniperca chuatsi</i>)

scientific article published on 23 June 2021

A Chromosome-Level Genome Assembly of the Reef Stonefish (<i>Synanceia verrucosa</i>) Provides Novel Insights into Stonustoxin (<i>sntx</i>) Genes

scientific article published on 14 September 2023

A Comparative Genomic Survey Provides Novel Insights into Molecular Evolution of l-Aromatic Amino Acid Decarboxylase in Vertebrates.

scientific article published on 16 April 2018

A Comparative Metagenomics Study on Gastrointestinal Microbiota in Amphibious Mudskippers and Other Vertebrate Animals

scientific article published on 06 September 2019

A Genomic Survey of Angiotensin-Converting Enzymes Provides Novel Insights into Their Molecular Evolution in Vertebrates

scientific article published on 09 November 2018

A chromosome-level reference genome assembly of the Reeve’s moray eel (Gymnothorax reevesii)

scientific article published on 29 July 2023

A comparative transcriptomic study on developmental gonads provides novel insights into sex change in the protandrous black porgy (Acanthopagrus schlegelii)

scientific article published on 13 November 2018

Assessing the genetic diversity of the critically endangered Chinese sturgeon Acipenser sinensis using mitochondrial markers and genome-wide single-nucleotide polymorphisms from RAD-seq

article

Comparative transcriptome analyses of venom glands from three scorpionfishes

scientific article published on 17 November 2018

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

article published in the Proceedings of the National Academy of Sciences of the United States of America

Comprehensive transcriptional changes in the liver of Kanglang white minnow (Anabarilius grahami) in response to the infection of parasite Ichthyophthirius multifiliis

scientific article published on 14 April 2020

Divergence, evolution and adaptation in ray-finned fish genomes

scientific article published on 15 May 2019

Draft Genome of the Mirrorwing Flyingfish (<i>Hirundichthys speculiger</i>)

publication published on 07 July 2021

Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus

scientific article published on 23 March 2020

Dynamic genetic differentiation drives the widespread structural and functional convergent evolution of snake venom proteinaceous toxins

scientific article published on 07 January 2022

Genome Assembly for a Yunnan-Guizhou Plateau "3E" Fish, (Regan), and Its Evolutionary and Genetic Applications

scholarly article by Wansheng Jiang et al published 2018 in Frontiers in Genetics

Genome Sequencing of the Japanese Eel (Anguilla japonica) for Comparative Genomic Studies on tbx4 and a tbx4 Gene Cluster in Teleost Fishes

scientific article published on 20 July 2019

Genome and Transcriptome Sequencing of casper and roy Zebrafish Mutants Provides Novel Genetic Clues for Iridophore Loss

scientific article published on 30 March 2020

Genome and Transcriptome Sequencing of the Astaxanthin-Producing Green Microalga, Haematococcus pluvialis

scientific article published in 2019

Genomics comparisons of three chromosome-level mudskipper genome assemblies reveal molecular clues for water-to-land evolution and adaptation

scientific article published in April 2024

High Throughput Identification of Antihypertensive Peptides from Fish Proteome Datasets

scientific article published on 02 October 2018

High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail () by Transcriptome Sequencing

scientific article published in 2018

High throughput screening of small immune peptides and antimicrobial peptides from the Fish-T1K database

scientific article published on 23 November 2018

High-Throughput Identification and Analysis of Novel Conotoxins from Three Vermivorous Cone Snails by Transcriptome Sequencing

scientific article published on 26 March 2019

High-Throughput Identification of Putative Antimicrobial Peptides from Multi-Omics Data of the Lined Seahorse (Hippocampus erectus)

scientific article published on 29 December 2019

High-throughput identification of heavy metal binding proteins from the byssus of chinese green mussel (Perna viridis) by combination of transcriptome and proteome sequencing

article

Insights into Body Size Evolution: A Comparative Transcriptome Study on Three Species of Asian Sisoridae Catfish

article

Molecular Evolution of Tryptophan Hydroxylases in Vertebrates: A Comparative Genomic Survey

article

Molecular cloning of two kcnk3 genes from the Northern snakehead (Channa argus) for quantification of their transcriptions in response to fasting and refeeding

scientific article published on 20 May 2019

Novel BRICHOS-Related Antimicrobial Peptides from the Marine Worm Heteromastus filiformis: Transcriptome Mining, Synthesis, Biological Activities, and Therapeutic Potential

scientific article published on 14 December 2023

Special issue on fish transcriptomics

scientific article published on 21 May 2019

The Complete Mitochondrial Genome of Glyptothorax macromaculatus Provides a Well-Resolved Molecular Phylogeny of the Chinese Sisorid Catfishes.

scientific article published on 4 June 2018

The Distribution of Tryptophan-Dependent Indole-3-Acetic Acid Synthesis Pathways in Bacteria Unraveled by Large-Scale Genomic Analysis

scientific article published on 10 April 2019

The First Genome Survey of the Antarctic Krill (Euphausia superba) Provides a Valuable Genetic Resource for Polar Biomedical Research

scientific article published on 31 March 2020

The complete mitochondrial genome of the intertidal spider (Desis jiaxiangi) provides novel insights into the adaptive evolution of the mitogenome and the evolution of spiders

scientific article published on 30 April 2021

The first Conus genome assembly reveals a primary genetic central dogma of conopeptides in C. betulinus

scientific article published on 23 February 2021

Transcriptome sequencing of the gill and barbel of Southern catfish (Silurus meridionalis) revealed immune responses and novel rhamnose-binding lectins (RBLs)

scientific article published on 19 November 2018

Transcriptomic Characterization of the South American Freshwater Stingray Potamotrygon motoro Venom Apparatus.

scientific article published on 18 December 2018

Transcriptomic evidence of adaptive tolerance to high environmental ammonia in mudskippers

scientific article published on 24 September 2018

Venomics Reveals the Venom Complexity of Sea Anemone Heteractis magnifica

scientific article published in 2024

Whole Genome Sequencing of Chinese White Dolphin (Sousa chinensis) for High-Throughput Screening of Antihypertensive Peptides

scientific article published on 28 August 2019

Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias

scientific article published on 28 June 2019

Whole Genome Sequencing of the Giant Grouper (Epinephelus lanceolatus) and High-Throughput Screening of Putative Antimicrobial Peptide Genes

scientific article published on 28 August 2019

Whole-Genome Sequencing of Chinese Yellow Catfish Provides a Valuable Genetic Resource for High-Throughput Identification of Toxin Genes

article

Whole-Genome Sequencing of the Giant Devil Catfish, Bagarius yarrelli

scientific article published on 01 August 2019

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