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List of works by Jakub Karczmarski

A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome.

scientific article published on 07 December 2016

A heterozygous mutation in GOT1 is associated with familial macro-aspartate aminotransferase

scientific article published on 14 July 2017

A novel approach to genome-wide association analysis identifies genetic associations with primary biliary cholangitis and primary sclerosing cholangitis in Polish patients.

scientific article

An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study.

scientific article published on 30 July 2009

Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

scientific article

Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length

scientific article published on 06 January 2006

Challenges in Cancer Biomarker Discovery Exemplified by the Identification of Diagnostic MicroRNAs in Prostate Tissues

scientific article published on 05 May 2020

Challenges in Stratifying the Molecular Variability of Patient-Derived Colon Tumor Xenografts

scientific article published on 19 December 2018

Combination Testing Using a Single MSH5 Variant alongside HLA Haplotypes Improves the Sensitivity of Predicting Coeliac Disease Risk in the Polish Population.

scientific article published on 25 September 2015

Combination of HLA-DQ2/-DQ8 Haplotypes and a Single MSH5 Gene Variant in a Polish Population of Patients with Type 1 Diabetes as a First Line Screening for Celiac Disease?

scientific article published on 15 April 2022

Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases

scientific article published on 10 May 2019

Comprehensive analysis of the palindromic motif TCTCGCGAGA: a regulatory element of the HNRNPK promoter

scientific article

Differences between Well-Differentiated Neuroendocrine Tumors and Ductal Adenocarcinomas of the Pancreas Assessed by Multi-Omics Profiling

scientific article published on 23 June 2020

Editing of hnRNP K protein mRNA in colorectal adenocarcinoma and surrounding mucosa

scientific article

Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.

scientific article published on 23 December 2016

Genome-wide co-localization of active EGFR and downstream ERK pathway kinases mirrors mitogen-inducible RNA polymerase 2 genomic occupancy.

scientific article published on September 2016

Histone H3 lysine 27 acetylation is altered in colon cancer

scientific article published on 3 June 2014

In search for interplay between stool microRNAs, microbiota and short chain fatty acids in Crohn's disease - a preliminary study

scientific article published on 21 September 2020

Inferring serum proteolytic activity from LC-MS/MS data

scientific article

Inferring serum proteolytic activity from LC-MS/MS data

scientific article published in February 2011

Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors.

scientific article published on 9 November 2010

Landscape of the hnRNP K protein-protein interactome

scientific journal article

Limited predictive value of achieving beneficial plasma (Z)-endoxifen threshold level by CYP2D6 genotyping in tamoxifen-treated Polish women with breast cancer.

scientific article published on August 2015

Limited prolonged effects of rifaximin treatment on irritable bowel syndrome-related differences in the fecal microbiome and metabolome.

scientific article published on 26 July 2016

Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids

scientific article published on 29 November 2018

Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles

scientific article

Molecular defense mechanisms of Barrett's metaplasia estimated by an integrative genomics

scientific article published on 30 March 2007

Mutation Profiling of Premalignant Colorectal Neoplasia

scientific article published on 12 November 2019

Mutational Mosaics of Cell-Free DNA from Pancreatic Cyst Fluids

scientific article published on 10 January 2020

Non-CYP2D6 Variants Selected by a GWAS Improve the Prediction of Impaired Tamoxifen Metabolism in Patients with Breast Cancer

scientific article published on 24 July 2019

Peripheral Blood Cells from Patients with Hodgkin's and Diffuse Large B Cell Lymphomas May Be a Better Source of Candidate Diagnostic miRNAs Than Circulating miRNAs

scientific article published on 04 February 2021

Pooled sample-based GWAS: a cost-effective alternative for identifying colorectal and prostate cancer risk variants in the Polish population

scientific article

Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers

scientific article published on 18 September 2013

Redefining the Practical Utility of Blood Transcriptome Biomarkers in Inflammatory Bowel Diseases

scientific article published on 01 April 2019

Signatures of circulating microRNA in four sarcoma subtypes

scientific article published on 01 January 2020

The composition and richness of the gut microbiota differentiate the top Polish endurance athletes from sedentary controls

scientific article published on 13 May 2020

Two-stage model-based clustering for liquid chromatography mass spectrometry data analysis

scientific article

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