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List of works by Douglas Domingues

A Novel Decomposing Model With Evolutionary Algorithms for Feature Selection in Long Non-Coding RNAs

scientific article published in 2020

A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers

scientific article

An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses

scientific article published on 08 September 2018

Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns

scientific article

CoffeebEST: an integrated resource for Coffea spp expressed sequence tags.

scientific article published on 19 December 2014

Construction and characterization of a BAC library from the Coffea arabica genotype Timor Hybrid CIFC 832/2.

scientific article

Decarboxylation mechanisms of C4 photosynthesis in Saccharum spp.: increased PEPCK activity under water-limiting conditions

scientific article published on 16 April 2019

Differentially Accumulated Proteins in Coffea arabica Seeds during Perisperm Tissue Development and Their Relationship to Coffee Grain Size.

scientific article published on 25 January 2016

Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons.

scientific article published on 17 March 2017

Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development.

scientific article published on 3 December 2016

Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes

Galactinol synthase transcriptional profile in two genotypes of Coffea canephora with contrasting tolerance to drought.

scientific article

Gene expression and enzymatic activity of pectin methylesterase during fruit development and ripening in Coffea arabica L.

scientific article

Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora

scientific article published on 11 September 2020

Genome-wide analysis of EgEVE_1, a transcriptionally active endogenous viral element associated to small RNAs in Eucalyptus genomes

scientific article

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.

scientific article published on 11 January 2018

Genome-wide identification, classification and transcriptional analysis of nitrate and ammonium transporters in Coffea.

scientific article published on 10 April 2017

Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arabica.

scientific article published on 27 May 2014

Identification of potential transcriptionally active Copia LTR retrotransposons in Eucalyptus.

scientific article published on 13 September 2011

Identification of the transcriptionally active cytochrome P450 repertoire in Coffea arabica

scientific article published on 27 March 2015

Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics.

scientific article

Low root PIP1-1 and PIP2 aquaporins expression could be related to reduced hydration in 'Rangpur' lime plants exposed to aluminium

scientific article published on 01 February 2020

Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms

scientific article published on 19 April 2020

MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors

scientific article published on 8 November 2021

Mutator System Derivatives Isolated from Sugarcane Genome Sequence

scientific article

New mariner elements in Anastrepha species (Diptera: Tephritidae).

scientific article

Nitric oxide mediates the hormonal control of Crassulacean acid metabolism expression in young pineapple plants.

scientific article published on 10 February 2010

Nitrogen starvation, salt and heat stress in coffee (Coffea arabica L.): identification and validation of new genes for qPCR normalization

scientific article published in March 2013

Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants

article

PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants

article

PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.

scientific article

Population structure and genetic relationships between Ethiopian and Brazilian Coffea arabica genotypes revealed by SSR markers

scientific article published on 01 April 2019

RNA-Seq differential expression analysis: An extended review and a software tool

scientific article published on 21 December 2017

TERL: classification of transposable elements by convolutional neural networks

scientific article published on 08 September 2020

Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements

scientific article

The Biotechnology Roadmap for Sugarcane Improvement

The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity

scientific article published on 18 December 2019

The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo

scientific article published on 5 January 2013

Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins

scientific article published in November 2009

Transcriptional patterns of Coffea arabica L. nitrate reductase, glutamine and asparagine synthetase genes are modulated under nitrogen suppression and coffee leaf rust

scientific article published on 03 January 2020

Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic

scientific article published on 14 August 2015

Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis

scientific article

Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits

scientific article published on 3 September 2015

ceRNAs in plants: computational approaches and associated challenges for target mimic research

scientific article published on 30 May 2017

mirtronDB: a mirtron knowledge base

scientific article published on 01 October 2019

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