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List of works by Vitor Martins dos Santos

A multi-platform flow device for microbial (co-) cultivation and microscopic analysis

scientific article

An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida

scientific article published on 11 February 2020

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

scientific article published on 14 September 2015

Combining Genetic Circuit and Microbial Growth Kinetic Models: A Challenge for Biological Modelling

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

scientific article published on 30 March 2017

Context matters: On the road to responsible biosafety technologies in synthetic biology

scientific article published on 28 December 2020

Design and analysis of a tunable synchronized oscillator

scientific article

Efficient Reconstruction of Predictive Consensus Metabolic Network Models.

scientific article

Establishing the ELIXIR Microbiome Community

scientific article published on 8 January 2024

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction ⬇️

scientific article published on May 25, 2011

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

scientific article published on 12 January 2016

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

scientific article published on 27 March 2021

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

scientific article

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

scientific article published on 7 July 2017

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

scientific article published on 11 September 2017

Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei

scientific article

Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger

scientific article

Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid

article

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

scientific article published on 22 October 2019

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

scientific article

Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections

scientific article published on 14 January 2020

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

scientific article

Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach

scientific article published on 16 February 2011

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

scientific article published in 2021

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

scientific article published on 23 October 2020

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

scientific article

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

scientific article published on 29 July 2015

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.

scientific article published on 7 February 2017

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

scientific article published on 25 February 2012

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

scientific article published on 15 August 2016

Pseudomonas putida KT2440 is HV1 certified, not GRAS

scientific article published on 14 June 2019

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

scientific article (publication date: 2015)

SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards

scientific article published on 25 July 2020

Systems Biology in ELIXIR: modelling in the spotlight

scientific article published on 31 May 2024

Systems biology at work

scientific article published in August 2010

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface.

scientific article published on August 2010

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

scientific article

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

scientific article published on 16 March 2011

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

scientific article

The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.

scientific article published in June 2010

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