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List of works by Junfeng Xia

A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction.

scientific article

A meta-analysis of somatic mutations from next generation sequencing of 241 melanomas: a road map for the study of genes with potential clinical relevance

scientific article

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.

scientific article

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives

scientific article published on 09 August 2012

BRAF(L597) mutations in melanoma are associated with sensitivity to MEK inhibitors

scientific article

Biomedical data integration, modeling, and simulation in the era of big data and translational medicine

scientific article

CINOEDV: a co-information based method for detecting and visualizing n-order epistatic interactions.

scientific article

CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data

scientific article published on 02 June 2023

Computational methods for the prediction of protein-protein interactions.

scientific article published in September 2010

Concordance between somatic copy number loss and down-regulated expression: A pan-cancer study of cancer predisposition genes.

scientific article published on 08 December 2016

Do cancer proteins really interact strongly in the human protein-protein interaction network?

scientific article

Efficient ensemble schemes for protein secondary structure prediction.

scientific article published in January 2008

Exploiting a reduced set of weighted average features to improve prediction of DNA-binding residues from 3D structures

scientific article

Identification of driver pathways in cancer based on combinatorial patterns of somatic gene mutations.

scientific article published on 7 December 2015

Identification of mutated driver pathways in cancer using a multi-objective optimization model.

scientific article

Inconsistency and features of single nucleotide variants detected in whole exome sequencing versus transcriptome sequencing: A case study in lung cancer

scientific article published on 23 April 2015

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome.

scientific article

LNDriver: identifying driver genes by integrating mutation and expression data based on gene-gene interaction network.

scientific article

MET Exon 14 Skipping in Non-Small Cell Lung Cancer.

scientific article published on 28 March 2016

MGDB: a comprehensive database of genes involved in melanoma.

scientific article

Mendelian Randomization Using the Druggable Genome Reveals Genetically Supported Drug Targets for Psychiatric Disorders

scientific article published in 2023

NGS catalog: A database of next generation sequencing studies in humans

scientific article published on 19 April 2012

Network analysis of gene fusions in human cancer.

scientific article

Next-generation sequencing of paired tyrosine kinase inhibitor-sensitive and -resistant EGFR mutant lung cancer cell lines identifies spectrum of DNA changes associated with drug resistance

scientific article published on 03 June 2013

OCGene: a database of experimentally verified ovarian cancer-related genes with precomputed regulation information.

scientific article published on 31 December 2015

Predicting hot spots in protein interfaces based on protrusion index, pseudo hydrophobicity and electron-ion interaction pseudopotential features.

scientific article published on 25 February 2016

Predicting protein-protein interactions from protein sequences using meta predictor

scientific article published on 13 April 2010

Prediction of Neuropeptides from Sequence Information Using Ensemble Classifier and Hybrid Features

scientific article published on 05 August 2020

Prediction of beta-hairpins in proteins using physicochemical properties and structure information

scientific article published on 01 September 2010

Prediction of cancer cell sensitivity to natural products based on genomic and chemical properties.

scientific article

Prediction of protein-protein interaction sites by means of ensemble learning and weighted feature descriptor

scientific article published on May 2016

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

scientific article

Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor.

scientific article published in January 2010

dbCID: a manually curated resource for exploring the driver indels in human cancer

scientific article published on 01 September 2019

dbCPG: A web resource for cancer predisposition genes

scientific article published on 12 May 2016

dbCPM: a manually curated database for exploring the cancer passenger mutations

scientific article published on 30 October 2018

dbCRSR: a manually curated database for regulation of cancer radiosensitivity.

scientific article

dbDSM: a manually curated database for deleterious synonymous mutations

scientific article published on 15 February 2016

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