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List of works by Stefan Bertilsson

A guide to the natural history of freshwater lake bacteria

scientific article

A pan‐genomic approach reveals novel <i>Sulfurimonas</i> clade in the ferruginous meromictic Lake Pavin

scientific article published in 2024

A(r)Ray of hope in analysis of the function and diversity of microbial communities.

scientific article

ASPIRE: The Amundsen Sea Polynya International Research Expedition

article

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

scientific article

An in vitro evaluation of browser and grazer fermentation efficiency and microbiota using European moose spring and summer foods.

scientific article

Are freshwater bacterioplankton indifferent to variable types of amino acid substrates?

scientific article published on 5 January 2016

Bacterial chitin degradation-mechanisms and ecophysiological strategies.

scientific article published on 14 June 2013

Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries

scientific article published in October 2005

Biogeography of bacterial communities exposed to progressive long-term environmental change

scientific article

Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies

scientific article

Carbon speciation and composition of natural microbial communities in polluted and pristine sediments of the Eastern Mediterranean Sea.

scientific article published on 7 April 2006

Coherent dynamics and association networks among lake bacterioplankton taxa

scientific article

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

scientific article

Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes

scientific article published in December 2004

Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes

article

Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

scientific article

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

scientific article published on October 2016

Constraints on methane oxidation in ice-covered boreal lakes

article

Contrasting activity patterns determined by BrdU incorporation in bacterial ribotypes from the Arctic Ocean in winter

scientific article

Contrasting effects of solar UV radiation on dissolved organic sources for bacterial growth

article

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.

scientific article published on 8 December 2017

Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

scientific article

Deltaproteobacteria and Spirochaetes-Like Bacteria Are Abundant Putative Mercury Methylators in Oxygen-Deficient Water and Marine Particles in the Baltic Sea

scientific article published on 22 September 2020

Depth and Dissolved Organic Carbon Shape Microbial Communities in Surface Influenced but Not Ancient Saline Terrestrial Aquifers

article

Detection and quantification of Vibrio populations using denaturant gradient gel electrophoresis

scientific article published on 30 May 2006

Diazotroph Genomes and Their Seasonal Dynamics in a Stratified Humic Bog Lake

scientific article published on 01 July 2020

Dietary Fiber in Bilberry Ameliorates Pre-Obesity Events in Rats by Regulating Lipid Depot, Cecal Short-Chain Fatty Acid Formation and Microbiota Composition

scientific article published on 15 June 2019

Digital quantification using amplified single-molecule detection.

scientific article

Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1.

scientific article

Diversity and abundance of aromatic catabolic genes in lake sediments in response to temperature change

scientific article published on 25 March 2014

Does ecosystem size determine aquatic bacterial richness? Comment

scientific article

Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

scientific article published on 27 September 2017

Effects of extracellular polymeric and humic substances on chlorpyrifos bioavailability to Chironomus riparius

scientific article published on 23 October 2009

Effects of multiple dimensions of bacterial diversity on functioning, stability and multifunctionality

scientific article

Effects of pesticides on community composition and activity of sediment microbes--responses at various levels of microbial community organization

scientific article

Emerging microbiota during cold storage and temperature abuse of ready-to-eat salad.

scientific article

Environmental influences on Vibrio populations in northern temperate and boreal coastal waters (Baltic and Skagerrak Seas)

scientific article

Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity

scientific article

Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability

scientific article

Formation of mercury methylation hotspots as a consequence of forestry operations

scientific article published on 22 September 2017

Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships

scientific article

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes

scientific article published on 10 December 2018

Function-specific response to depletion of microbial diversity

scientific article

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

scientific article published on 08 January 2016

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

scientific article published on 28 September 2018

Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases

scientific article published on 10 January 2018

Global phylogeography of chitinase genes in aquatic metagenomes

scientific article published on 29 November 2010

Growth response of Vibrio cholerae and other Vibrio spp. to cyanobacterial dissolved organic matter and temperature in brackish water.

scientific article published on 26 March 2007

Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations

scientific article

High archaeal diversity in Antarctic circumpolar deep waters

scientific article published on 11 October 2011

High bicarbonate assimilation in the dark by Arctic bacteria.

scientific article published on 17 June 2010

High methylmercury formation in ponds fueled by fresh humic and algal derived organic matter

scientific article published on 10 November 2017

High ratio of bacteriochlorophyll biosynthesis genes to chlorophyll biosynthesis genes in bacteria of humic lakes.

scientific article published on 2 October 2009

High-Fat Diet Enriched with Bilberry Modifies Colonic Mucus Dynamics and Restores Marked Alterations of Gut Microbiome in Rats

scientific article published on 12 August 2019

Host-specificity and dynamics in bacterial communities associated with Bloom-forming freshwater phytoplankton

scientific article published on 20 January 2014

How to see more: double hybridization to reveal ecological differentiation among close bacterial relatives

scientific article published on 30 March 2017

Impact of trace element addition on biogas production from food industrial waste--linking process to microbial communities

scientific article

Influence of pulsed and continuous substrate inputs on freshwater bacterial community composition and functioning in bioreactors

scientific article

Infrequent marine-freshwater transitions in the microbial world.

scientific article published on 31 August 2009

Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11).

scientific article published on 6 October 2009

Integrating experiments with system-level biogeochemical modeling to understand nitrogen cycling of reservoir sediments at elevated hydrostatic pressure

scientific article published in 2021

Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples.

scientific article published on 9 April 2018

Interactions of Freshwater Cyanobacteria with Bacterial Antagonists

scientific article published on 23 January 2017

Interactions with DOM and biofilms affect the fate and bioavailability of insecticides to invertebrate grazers ⬇️

scientific article published on September 6, 2012

Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling.

scientific article published in August 2018

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

scientific article published on 14 February 2021

Lake bacterioplankton dynamics over diurnal timescales

article

Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene

scientific article published in 2021

Links between bacterial production, amino-acid utilization and community composition in productive lakes

scientific article

Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil

article

Mercury methylating microbial communities of boreal forest soils

scientific article published in Scientific Reports

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI.

scientific article published on July 2017

Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer

scientific article

Metagenomic insights into strategies of aerobic and anaerobic carbon and nitrogen transformation in boreal lakes.

scientific article published on 10 July 2015

Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere

scientific article published on 20 November 2018

Methanogenesis Is an Important Process in Controlling MeHg Concentration in Rice Paddy Soils Affected by Mining Activities

scientific article published on 21 October 2020

Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes

article

Microbial characterization of artificial sediment and comparisons with natural sediments--implications for toxicity testing

scientific article published in November 2005

Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform

scientific article

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

scientific article published on 20 October 2015

Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean

scientific article published on 21 April 2017

Molecular Basis and Ecological Relevance of Caulobacter Cell Filamentation in Freshwater Habitats

scientific article published on 20 August 2019

Molecular composition of organic matter controls methylmercury formation in boreal lakes

scientific article published on 09 February 2017

Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

scientific article

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples ⬇️

scientific article published on October 19, 2010

Opposing spatial trends in methylmercury and total mercury along a peatland chronosequence trophic gradient

scientific article published on 13 February 2020

Oral Microbiota Development in Early Childhood ⬇️

scientific article published on 13 December 2019

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters

scientific article published on 23 March 2017

Presence of Aedes and Anopheles mosquito larvae is correlated to bacteria found in domestic water-storage containers.

scientific article published on 29 March 2018

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

scientific article

Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing.

scientific article published on 7 May 2012

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

scientific article published on 15 October 2009

Quinolone-resistant Escherichia coli isolated from birds of prey in Portugal are genetically distinct from those isolated from water environments and gulls in Portugal, Spain and Sweden

scientific article published on 27 August 2013

Resistant microbial cooccurrence patterns inferred by network topology

scientific article published on 9 January 2015

Role for urea in nitrification by polar marine Archaea

scientific article

Seasonal Variation in Abundance and Diversity of Bacterial Methanotrophs in Five Temperate Lakes.

scientific article

Sequencing-independent method to generate oligonucleotide probes targeting a variable region in bacterial 16S rRNA by PCR with detachable primers.

scientific article

Shifts in mercury methylation across a peatland chronosequence: From sulfate reduction to methanogenesis and syntrophy

scientific article published on 23 December 2019

Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade

scientific article

Sources and remediation techniques for mercury contaminated soil

scientific article published on 15 October 2014

Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters

scientific article published on 13 August 2019

Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts

scientific article published on 29 September 2020

Survival of Campylobacter jejuni and Campylobacter coli water isolates in lake and well water

scientific article published on 01 September 2018

Temporal variability of bacterioplankton is habitat driven

scientific article published on 26 September 2018

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles

scientific article published on 08 March 2021

The environment drives microbial trait variability in aquatic habitats

scientific article published on 01 October 2020

The founding charter of the Genomic Observatories Network

scientific article published on 7 March 2014

The influence of light and water mass on bacterial population dynamics in the Amundsen Sea Polynya

article

The under-ice microbiome of seasonally frozen lakes

article

Time-scale dependence in numerical simulations: Assessment of physical, chemical, and biological predictions in a stratified lake at temporal scales of hours to months

article

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

scientific article

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea ⬇️

scientific article (publication date: October 2011)

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

scientific article published on 19 January 2016

Uncovering microbial inter-domain interactions in complex communities

scientific article published on 07 October 2019

Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach

scientific article

Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.

scientific article published in September 2017

Winter bloom of a rare betaproteobacterium in the Arctic Ocean

scientific article

mOTUpan: a robust Bayesian approach to leverage metagenome-assembled genomes for core-genome estimation

scientific article published in 2022

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