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List of works by Yasuhiro Matsunaga

Anomalous diffusion in folding dynamics of minimalist protein landscape

scientific article published on 06 December 2007

Cooperativity at different space and time scales in multiscale protein dynamics

scientific article published on 19 July 2010

Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images

scientific article published in 2022

Dimensionality of Collective Variables for Describing Conformational Changes of a Multi-Domain Protein

scientific article published on 6 April 2016

Domain Motion Enhanced (DoME) Model for Efficient Conformational Sampling of Multidomain Proteins.

scientific article published on 4 November 2015

Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB.

scientific article

Exploring Configuration Space and Path Space of Biomolecules Using Enhanced Sampling Techniques-Searching for Mechanism and Kinetics of Biomolecular Functions

scientific article published on 15 October 2018

GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms.

scientific article

GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.

scientific article

How many dimensions are required to approximate the potential energy landscape of a model protein?

scientific article published on 01 February 2005

Influence of structural symmetry on protein dynamics

scientific article

Linking time-series of single-molecule experiments with molecular dynamics simulations by machine learning.

scientific article

Minimum free energy path of ligand-induced transition in adenylate kinase

scientific article (publication date: 2012)

Phase-space reaction network on a multisaddle energy landscape: HCN isomerization

scientific article published on 01 November 2005

Refining Markov state models for conformational dynamics using ensemble-averaged data and time-series trajectories

article

Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure

scientific article published on 20 July 2021

Sequential data assimilation for single-molecule FRET photon-counting data.

scientific article

Spatio-temporal hierarchy in the dynamics of a minimalist protein model

scientific article published on December 2013

Topographical complexity of multidimensional energy landscapes

scholarly article

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