List of works - Nicole Wheeler

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes.

scientific article published on 8 August 2016

Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae

scientific article published on 17 August 2020

An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation

scientific article published on 19 September 2019

Breaking the code of antibiotic resistance

scientific article published on 26 March 2018

Convergent regulatory evolution and loss of flight in paleognathous birds

scientific article published on 01 April 2019

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

scientific article published on 03 September 2019

Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

scientific article published on 08 June 2020

Identifying functional adaptations associated with pathogenicity in bacteria. ⬇️

2017 doctoral thesis by Nicole E. Wheeler at University of Canterbury

Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae

scientific article published on 23 October 2020

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

scholarly article

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

scientific article published on 15 May 2019

Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica.

scientific article published on 8 May 2018

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling ⬇️

scientific article

Tracing outbreaks with machine learning

scientific article published on 01 May 2019

We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts?

scientific article published on 22 July 2019

Why so narrow: Distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems

scientific article published on 9 January 2017

List of works by Nicole Wheeler

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes.

Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae

An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation

Breaking the code of antibiotic resistance

Convergent regulatory evolution and loss of flight in paleognathous birds

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Identifying functional adaptations associated with pathogenicity in bacteria. ⬇️

Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling ⬇️

Tracing outbreaks with machine learning

We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts?

Why so narrow: Distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems