List of works - Jian Zhang

All-atom replica exchange molecular simulation of protein BBL.

scientific article published in August 2008

Atomistic picture for the folding pathway of a hybrid-1 type human telomeric DNA G-quadruplex

scientific article

Consequences of Energetic Frustration on the Ligand-Coupled Folding/Dimerization Dynamics of Allosteric Protein S100A12.

scientific article

Consequences of Hydrophobic Nanotube Binding on the Functional Dynamics of Signaling Protein Calmodulin

scientific article published on 18 June 2019

Constrained proper sampling of conformations of transition state ensemble of protein folding.

scientific article

Discrete state model and accurate estimation of loop entropy of RNA secondary structures.

scientific article published on March 2008

Effectiveness of Φ-value analysis in the binding process of Arc repressor dimer.

scientific article published on 14 July 2011

Effects of disulfide bonds on folding behavior and mechanism of the beta-sheet protein tendamistat.

scientific article

Effects of zinc binding on the conformational distribution of the amyloid-beta peptide based on molecular dynamics simulations.

scientific article published on 15 November 2007

Folding behavior of ribosomal protein S6 studied by modified Gō-like model.

scientific article published on 28 March 2007

Folding of a small RNA hairpin based on simulation with replica exchange molecular dynamics.

scientific article

Folding of proteins with an all-atom Go-model.

scientific article

Free energy landscape and multiple folding pathways of an H-type RNA pseudoknot

scientific article published on June 2015

Metal-coupled folding of Cys2His2 zinc-finger.

scientific article published on 29 December 2007

Molecular simulations of metal-coupled protein folding

scientific article

Multiple folding mechanisms of protein ubiquitin

scientific article published on 01 May 2005

Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimation

scientific article published on 28 October 2009

Protein folding simulations: from coarse-grained model to all-atom model.

scientific article published on June 2009

RNA fragment modeling with a nucleobase discrete-state model

scientific article published on 14 February 2012

RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks

scholarly article by Jun Li published in November 2018

Structural selection of ionic-complementary peptides with electrostatic interactions

scientific article published on 30 September 2010

Structure Prediction of RNA Loops with a Probabilistic Approach

scientific article

Thermodynamic stability and kinetic foldability of a lattice protein model

scientific article published on 01 April 2004

Understanding protein folding cooperativity based on topological consideration.

scientific article

Understanding the folding and stability of a zinc finger-based full sequence design protein with replica exchange molecular dynamics simulations.

scientific article published in May 2007

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.

scientific article published on 19 May 2017

List of works by Jian Zhang

All-atom replica exchange molecular simulation of protein BBL.

Atomistic picture for the folding pathway of a hybrid-1 type human telomeric DNA G-quadruplex

Consequences of Energetic Frustration on the Ligand-Coupled Folding/Dimerization Dynamics of Allosteric Protein S100A12.

Consequences of Hydrophobic Nanotube Binding on the Functional Dynamics of Signaling Protein Calmodulin

Constrained proper sampling of conformations of transition state ensemble of protein folding.

Discrete state model and accurate estimation of loop entropy of RNA secondary structures.

Effectiveness of Φ-value analysis in the binding process of Arc repressor dimer.

Effects of disulfide bonds on folding behavior and mechanism of the beta-sheet protein tendamistat.

Effects of zinc binding on the conformational distribution of the amyloid-beta peptide based on molecular dynamics simulations.

Folding behavior of ribosomal protein S6 studied by modified Gō-like model.

Folding of a small RNA hairpin based on simulation with replica exchange molecular dynamics.

Folding of proteins with an all-atom Go-model.

Free energy landscape and multiple folding pathways of an H-type RNA pseudoknot

Metal-coupled folding of Cys2His2 zinc-finger.

Molecular simulations of metal-coupled protein folding

Multiple folding mechanisms of protein ubiquitin

Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimation

Protein folding simulations: from coarse-grained model to all-atom model.

RNA fragment modeling with a nucleobase discrete-state model

RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks

Structural selection of ionic-complementary peptides with electrostatic interactions

Structure Prediction of RNA Loops with a Probabilistic Approach

Thermodynamic stability and kinetic foldability of a lattice protein model

Understanding protein folding cooperativity based on topological consideration.

Understanding the folding and stability of a zinc finger-based full sequence design protein with replica exchange molecular dynamics simulations.

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.