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List of works by Denitsa Eckweiler

3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations

scientific article published on 11 June 2012

Application of Synthetic Peptide Arrays To Uncover Cyclic Di-GMP Binding Motifs

scientific article published on 31 August 2015

Contribution of Veillonella parvula to Pseudomonas aeruginosa-mediated pathogenicity in a murine tumor model system

scientific article

Cross talk between the response regulators PhoB and TctD allows for the integration of diverse environmental signals in Pseudomonas aeruginosa.

scientific article published on 16 June 2015

Deep transcriptome profiling of clinical Klebsiella pneumoniae isolates reveals strain and sequence type-specific adaptation.

scientific article

Elucidation of sigma factor-associated networks in Pseudomonas aeruginosa reveals a modular architecture with limited and function-specific crosstalk.

scientific article

FnrL and Three Dnr Regulators Are Used for the Metabolic Adaptation to Low Oxygen Tension in Dinoroseobacter shibae.

scientific article

Functional modules of sigma factor regulons guarantee adaptability and evolvability

scientific article published on 26 February 2016

Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles.

scientific article

Identification of the alternative sigma factor SigX regulon and its implications for Pseudomonas aeruginosa pathogenicity

scientific article published on November 2013

In vivo mRNA profiling of uropathogenic Escherichia coli from diverse phylogroups reveals common and group-specific gene expression profiles

scientific article

PRODORIC2: the bacterial gene regulation database in 2018.

scientific article

The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation

scientific article

The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing

scientific article

The extensive set of accessory Pseudomonas aeruginosa genomic components.

scientific article published on 12 May 2014

Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa

scientific article published on 23 May 2016

aroA-Deficient Salmonella enterica Serovar Typhimurium Is More Than a Metabolically Attenuated Mutant.

scientific article published on 6 September 2016

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