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List of works by Kimberly Van Auken

2018 Update on Protein-Protein Interaction Data in WormBase

scientific article published on 26 November 2018

A guide to best practices for Gene Ontology (GO) manual annotation.

scientific article published on 09 July 2013

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

scientific article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013

Automatic categorization of diverse experimental information in the bioscience literature

scientific article

BC4GO: a full-text corpus for the BioCreative IV GO task

scientific article

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

scientific article published on 01 October 2019

Guidelines for the functional annotation of microRNAs using the Gene Ontology.

scientific article published on 25 February 2016

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

scientific article

Overview of the gene ontology task at BioCreative IV

scientific article

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

Reactome and the Gene Ontology: digital convergence of data resources

scientific article

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

scientific article (publication date: 2012)

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation

scientific article

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

scientific article published on 02 September 2020

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

scientific article (publication date: 2012)

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase

scientific article published on 01 January 2020

The BioGRID Interaction Database: 2011 update

scientific article

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes

scientific article published on 01 January 2018

WormBase 2007

scientific article

WormBase 2012: more genomes, more data, new website

scientific article

WormBase 2014: new views of curated biology

scientific article

WormBase 2016: expanding to enable helminth genomic research

scientific article

WormBase 2017: molting into a new stage.

scientific article published on 24 October 2017

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

scientific article

WormBase: a comprehensive resource for nematode research

scientific article

WormBase: a modern Model Organism Information Resource

scientific article published on 01 January 2020

WormBase: a multi-species resource for nematode biology and genomics

scientific article

WormBase: better software, richer content

scientific article

WormBase: new content and better access

scientific article

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